PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G018200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 488aa    MW: 54266.3 Da    PI: 5.3742
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G018200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.9e-12314359454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Manes.05G018200.1.p 314 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVCYINEL 359
                          799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-5225211IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.533310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-17311373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.08E-14313363No hitNo description
PfamPF000102.1E-9314359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-15314373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-15316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MEELIISPSS SSSLVPSSQE TPSTLQQRLQ FLLQSEPDWW TYAIFWQKSH DETGRIFLSW  60
GDGYFQGFAD ISPKLNTMNN HLQHRIPSFN SEGKRAVKGI QPLIGEPHDI DVSVMDDNNV  120
NDVEWFYVMS LTRSFSAGDG IPGKALTTGT MVWLTGGQEL QFYNCERAKE ARMHGLQTFV  180
CVPTCNGVLE LGSSDMVREN WGLVKQAKSL FGSDVSCMIP KDPYPTTPPI QLFDMNISFA  240
DIGIIAGIQG GESTPKEKFA QEGEAKKENA KADLSYVDSE HSGSDCTLVE SNIKERTPKK  300
RGRKPGIGRD TPLNHVEAER QRREKLNHRF YALRAVVPNV SRMDKASLLS DAVCYINELK  360
AKIDELESHL QRESKRVKLE VADNIDNQST TTCVDQDKPN NSGGAGFALE VDVKIMGNDA  420
MIRVQSENVN YPGARLLSAL RDLDFKVHHA SMSTVNELML QDLVVRVPNG LITDENLKSA  480
LLGRLEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-38192113192Transcription factor MYC3
4rqw_B6e-38192113192Transcription factor MYC3
4rs9_A6e-38192113192Transcription factor MYC3
4yz6_A6e-38192113192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G018200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612319.10.0transcription factor MYC2-like
TrEMBLA0A2C9VSI30.0A0A2C9VSI3_MANES; Uncharacterized protein
STRINGcassava4.1_009912m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-78bHLH family protein