PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.04G104400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C2H2 | ||||||||
Protein Properties | Length: 287aa MW: 31572.1 Da PI: 7.1104 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 111 | 133 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Manes.04G104400.1.p 111 FSCNYCQRKFYSSQALGGHQNAH 133 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.9E-6 | 108 | 138 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 111 | 138 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 113 | 133 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MEPLSSEVCL SETSSSIVSV SNAPSKFSLN VSMDNPKGRK QLQEEEEEEE EERENKNEDT 60 SDRDLVLDLS LLSGKDSKPE LINLIDSFDM ESSQKSSLDT PQGNEIEPRV FSCNYCQRKF 120 YSSQALGGHQ NAHKRERTLA KRGQRINGGG SFSLGHHHNS QINRYTSMAS LPLHGLLNRS 180 LGIQVHSMIH KPSFVPSSTL SSSNVHGKNG WSRQPIGQQP AVGRLPSESF HMGTRIGSSN 240 GVARFESAGK FSPAGERMGG YWCDSGVNHL KTKQDDLQKL DLSLKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.04G104400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021610040.1 | 0.0 | zinc finger protein 1 | ||||
TrEMBL | A0A2C9W3U1 | 0.0 | A0A2C9W3U1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_013271m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1439 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80730.1 | 3e-41 | zinc-finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Manes.04G104400.1.p |