PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G085300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family DBB
Protein Properties Length: 332aa    MW: 37455 Da    PI: 6.8803
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G085300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.81.9e-073465435
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                          +C+ ++  e++ fC  ++  lC+ C  + H+
  Manes.04G085300.1.p 34 IRCDVCDMDEASVFCSADEAALCDACDRHVHH 65
                         68******99*******************974 PP
2zf-B_box24.94.1e-0885122237
             zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..H 37 
                          + + C+ ++e ++ lfC++++  lC++C   +H+   H
  Manes.04G085300.1.p  85 QSPLCDVCQERRAFLFCQEDRAILCRECDIPIHEVndH 122
                          6789***************************9943443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.4E-83178IPR000315B-box-type zinc finger
PROSITE profilePS5011910.7083178IPR000315B-box-type zinc finger
PfamPF006431.3E-53365IPR000315B-box-type zinc finger
CDDcd000211.00E-53464No hitNo description
SMARTSM003362.0E-1384131IPR000315B-box-type zinc finger
PROSITE profilePS5011910.39584131IPR000315B-box-type zinc finger
PfamPF006431.7E-685126IPR000315B-box-type zinc finger
CDDcd000212.58E-987131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAMFSLTSSK KNYYNNHSAT CTAKDTIREK RMKIRCDVCD MDEASVFCSA DEAALCDACD  60
RHVHHANKLA SKHLRFSLLH PSSKQSPLCD VCQERRAFLF CQEDRAILCR ECDIPIHEVN  120
DHMKKHNRFL LTGVKLSASS SLHPRSSSSN SCNTNMNTNG KKIPQQLHLH NPCSFSDEII  180
SSPSVERPSP SLANQSPNSD NISLSTSSIS EYLETLPGWR VDDFLEPSMA AHDGFCKNFS  240
NFSPLMVDQD LESDSISFSP EDLAFWVPQD SAQLPQQDHV HHPQFEGELL DVLKESKEAT  300
KGKINRKWRS EDAFRVPEMS HRALKKSRHF S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G085300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021609779.10.0B-box zinc finger protein 20-like isoform X1
TrEMBLA0A2C9W2430.0A0A2C9W243_MANES; Uncharacterized protein
STRINGcassava4.1_027185m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.15e-62salt tolerance homolog2