PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G186500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | NAC | ||||||||
Protein Properties | Length: 580aa MW: 64771.8 Da PI: 4.3835 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.5 | 5.1e-53 | 20 | 146 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 ppGfrFhPtdeelv +yLk+k+ +++l+l ++i+e+d+yk++P++Lp + +k+++++w+fFs+rd+ky++g r+nrat +gyWkatgkd Manes.02G186500.1.p 20 PPGFRFHPTDEELVLYYLKRKMCKRRLQL-DIIRELDVYKWDPEELPgQsVLKTGDRQWFFFSPRDRKYPNGARSNRATGQGYWKATGKD 108 8****************************.99**************96347788999********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++ ++++vglkktLvfy+grap+ge+tdWvmhey+l Manes.02G186500.1.p 109 RTIKC-NSRNVGLKKTLVFYRGRAPNGERTDWVMHEYTL 146 *****.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.11E-60 | 18 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.948 | 19 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-27 | 20 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 580 aa Download sequence Send to blast |
MTVTSASCLD REEGDDKVWP PGFRFHPTDE ELVLYYLKRK MCKRRLQLDI IRELDVYKWD 60 PEELPGQSVL KTGDRQWFFF SPRDRKYPNG ARSNRATGQG YWKATGKDRT IKCNSRNVGL 120 KKTLVFYRGR APNGERTDWV MHEYTLDEEE LKRCLNVQDY YALYKVYKKS GPGPKNGEQY 180 GAPFKEEDWA DDEYAVANNS DTPVNQPNVV TPPVDAIKAI VQVEQPLNGI EDFMKQIADE 240 NPFDQNQISD CDYTSELLQI AGEDETQSIL VDPSLREVIF PESISLSPET VQRDSLDFNQ 300 SAISTFQSLE VPEPTSGPHS SEGALQLCED NFLELDDLIG PEPTLLNNEK TANNLSFDDF 360 DGLSEFDLYH DAELFLNEMG PVSHVNEVGL QLQFHSMANQ VDYQLQPHSA VNDVDYLQPE 420 AFDAAHLWVD DQRSNVHVTA ETTHGILSQP TPGVAHESSS IPTGANENQS SGEDGGATGW 480 FSSALWTFVE SIPTTPASAC ETPLVNKAFE RMSSFSRIRL NVKNNNINND NLISSDRAAN 540 SNKAGGTSRG FLILSILGAL CAILWVLSGP SVLKRAIFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-50 | 20 | 146 | 16 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 38 | 45 | RKMCKRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G186500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR605142 | 0.0 | KR605142.1 Manihot esculenta NAC transcription factors 4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021603416.1 | 0.0 | NAC domain-containing protein 17-like isoform X1 | ||||
TrEMBL | A0A0M4FSE2 | 0.0 | A0A0M4FSE2_MANES; NAC transcription factors 4 | ||||
STRING | cassava4.1_004386m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6131 | 34 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 1e-146 | NAC domain containing protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G186500.1.p |
Publications ? help Back to Top | |||
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