PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G239200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 396aa    MW: 44821.4 Da    PI: 5.1648
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G239200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.62.6e-14202253155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++++++L+
  Manes.01G239200.1.p 202 QRMTHIAVERNRRRQMNDHLNSLRSLMPSS---YVERGDQASIVGGAIDFVRQLE 253
                          79****************************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.44E-12200257No hitNo description
SuperFamilySSF474595.89E-17201278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.123201252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-12202253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-14202269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-11207258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MERRQAPIDS CFLGENLDVE GLQGGCINTE SLRFEGEEEE PLFLMSSLED RMPFPQMLQS  60
VESPPFFPFR EPNFQTLLKL QHLTRPWDMN TYINETKTQV QALELESCVT HDISDLHSPT  120
KSETKGLQNP LSDSCLEDAS PESNQRRANS VGKEQNSLFP WTQPQITLNE TNCSKHSQIV  180
PKERRKRKRT RKIKNKEEVE TQRMTHIAVE RNRRRQMNDH LNSLRSLMPS SYVERGDQAS  240
IVGGAIDFVR QLEQLLQSLE AQKRMKEREP AATPMGISSN GLFTPQAECN IQRDSGNSEE  300
EAKVKRKSEA AVIEVTAVQN HVKLKIQCER RTGQLVRAIA ALEDLSLLVL ELNITSSETS  360
VLYSFNLKIE DDCKLESADE IAATVDQIFS TTNGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183188RRKRKR
2183191RRKRKRTRK
3202213RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G239200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624064.10.0transcription factor bHLH67-like
TrEMBLA0A2C9WNI20.0A0A2C9WNI2_MANES; Uncharacterized protein
STRINGcassava4.1_029469m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.13e-65bHLH family protein