PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G225200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | FAR1 | ||||||||
Protein Properties | Length: 758aa MW: 85947 Da PI: 6.6655 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.5 | 1.4e-20 | 59 | 152 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHn 86 +fY+++Ak++GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w++t +++ Hn Manes.01G225200.1.p 59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQIKASDDGKMQRNRKSSRCGCQAYMRIVKKAdfdVPEWRITGFSNIHN 148 6***************999887455667********************9*******************98877677789*********** PP FAR1 87 Hela 90 Hel Manes.01G225200.1.p 149 HELL 152 **96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-17 | 59 | 152 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 9.0E-24 | 275 | 366 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.409 | 538 | 586 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.7E-7 | 559 | 584 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.7E-6 | 561 | 588 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 758 aa Download sequence Send to blast |
MSKLTDLVKE TSESGMDSCA DDIGTVEEIA EDTILSRQTS VNLVPFIGQR FVSQDAAYEF 60 YCSFAKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QIKASDDGKM QRNRKSSRCG 120 CQAYMRIVKK ADFDVPEWRI TGFSNIHNHE LLKSNEVQLL PAHSTMSADD KSRICMYAKA 180 GMSVRQMLRL MELEKGVKLG CLPFTEMDVR NLLQSFRNVN RDNDAINLLQ MCKYKKDKDP 240 NFKYNFQIDA NNRLERIAWS YALSIQSYEA FGDAVIFDTT HRLDAYDMIM GIWIGVDNHG 300 SNCFFGCVLL RDENMESFSW ALKTFLEFVD GKAPETILTD QNIWLKEAVA VEMPRTKHAF 360 CIWHIIAKFS DWFSILLGSQ YDKWKAEFHR LYNLQSVEDF EVGWGEMVDT YGLHGNKHIV 420 SLYALRTFWA LPFLRCYFFA GMTSTFQSDS INAFIQRILS AQSLDNFVEK VAVAVGYKED 480 AGPKQKVPRK VHKISLKTGS PIESHAATVL TPYAFGKLQE ELVLAPQYAS LMVDESYFIV 540 RHHIDMDGGC KVLWIPHDEF ISCSCHLFEF SGILCRHVLR VLSTNNCFHI PDRYLPVRWR 600 DVGTSLTKPF PAFTSDEHAG KVQLLQSMVS TLIAESMGTE ERLDVACDQV AHVLSSIKEF 660 PGPAHDDNDI TYTSPSDSLI LPEVEDSVGF VQSFAAGSTH DPMTLGKMKE RRLRDGININ 720 RKRRRCSLPC CGQFGHDATD CPMMGSDDLN EDGLGFI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 720 | 724 | RKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G225200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021609593.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11-like isoform X1 | ||||
Swissprot | Q9SY66 | 0.0 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | A0A2C9WPN2 | 0.0 | A0A2C9WPN2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_002350m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF594 | 30 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 0.0 | FAR1-related sequence 11 |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G225200.1.p |
Publications ? help Back to Top | |||
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