PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G160800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C3H | ||||||||
Protein Properties | Length: 703aa MW: 76090.6 Da PI: 5.9135 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.7 | 1.5e-06 | 277 | 297 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg Manes.01G160800.1.p 277 PCPEFRK-GSCRQGDACEYAHG 297 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 3.26E-15 | 70 | 159 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 9.1E-16 | 73 | 148 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.021 | 73 | 103 | IPR002110 | Ankyrin repeat |
Pfam | PF12796 | 2.1E-9 | 73 | 142 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.406 | 73 | 143 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.76E-13 | 75 | 148 | No hit | No description |
SMART | SM00248 | 4.6E-4 | 108 | 140 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.315 | 108 | 143 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 1.0E-4 | 272 | 298 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.662 | 277 | 299 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-4 | 305 | 335 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 20 | 307 | 330 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.221 | 307 | 331 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MCSGSKKKPT HTGVFMGNEF QKDGYCSDLS VLLELSASND LIGFKREIQG GREVDEPGLW 60 YGGRIGSKKM GFEERTPLMI AALFGSKDVL SYILEMGHVD VNRCCGSDGA TALHCAVAGG 120 SASSVEVVKL LLAASADPNA VDANGNCASD LLVPVACFSF NLRRQALELV LKGGCTSDES 180 CVLADQNPDE IDVQQQQEVS TPRLFKDGTD KKEYPVDLTL PDINYGIYGT DEFRMYTFKV 240 KPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPE FRKGSCRQGD ACEYAHGIFE 300 CWLHPAQYRT RLCKDETNCS RRVCFFAHKP EELRPLYAST GSAVPSPRSL SANGSALDMG 360 SISPLALGSP SVMIPPTSTP PVTPTGSLSP LGSWPSQSNI VPLNLQLPGS RLKSALSARD 420 MDMDAELFAL DSHHCRQQLM DEISGLPSPS SWNNGLSTAS AFAIFGDRTT ELTRLGGVKP 480 TNLEGIFGSL DPTILPQLQG LPGDATASQL QSPTEIRMRQ NINQLLRSSY PTNFPSSPVR 540 TPSFRIDSSG AAAAAVLNSR AAFANRSQSF IERSAVNRHT GFSSPTSSAT ILPSNLSDWG 600 SPDGKLEWGM QGQGLDKLRK SASFGIRSNG SSLAVAAVSE PATVDKLDVS WVQSLVKDTP 660 PQHSGHFSFE EQQQQCLINT GGSEMLPAWV EQLYIEQEQM VA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G160800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021610469.1 | 0.0 | zinc finger CCCH domain-containing protein 66-like | ||||
Swissprot | Q9LUZ4 | 0.0 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A2C9WLQ6 | 0.0 | A0A2C9WLQ6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_002724m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1796 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G160800.1.p |