PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G143800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 355aa    MW: 39964.9 Da    PI: 5.1837
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G143800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM74.23.2e-2371323128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                           GfrF+Ptde+lv++yL+kk++++ l+l   i+e+diy  +Pw++  +vk+   + ++++ ++ k  ++ +  r + sg+Wk + +++  
  Manes.01G143800.1.p   7 CGFRFKPTDEDLVHFYLQKKLDRQALPL-GLITECDIYAGNPWKILDNVKN--FDGFYYVFTNLKRMSKAKIDRRAGSGTWKGQTTNRFQ 93 
                          6***************************.99**************755544..344555555666666778888889*****98887766 PP

                  NAM  93 lskkgelvglkktLvfy...kg.rapkgektdWvmheyrl 128
                           s +g++ + kkt++f    k+ ++   ++ +W+m e++l
  Manes.01G143800.1.p  94 QS-EGKTRWAKKTFIFEvdkKNlKSVGQNNGRWLMVEFSL 132
                          66.999**********9765332444455899******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-275149IPR003441NAC domain
PROSITE profilePS5100527.3925149IPR003441NAC domain
PfamPF023658.6E-158132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MSSPWVCGFR FKPTDEDLVH FYLQKKLDRQ ALPLGLITEC DIYAGNPWKI LDNVKNFDGF  60
YYVFTNLKRM SKAKIDRRAG SGTWKGQTTN RFQQSEGKTR WAKKTFIFEV DKKNLKSVGQ  120
NNGRWLMVEF SLGDEGLDGK AVLCRIYNKH ARDFHKKEQV GVDYSNCEAI VPYVEKKQVS  180
LADDKEGNQH PTKKMKEQRS IADDEEGHQN SKKMKQREPV DLYGESIGST SFCPSNFVVE  240
QLPVSSDYSS RFPEDGAAFL ADGELNSLLD FPSDYDLTSL LLDMDVGTGT FPEDELSKFL  300
AENIDDGGFL SSMPPLTMQC NAVNKDDENG NNLSSSMPLQ GGFCDRNAVL RNVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-14815120167NO APICAL MERISTEM PROTEIN
1ut4_B2e-14815120167NO APICAL MERISTEM PROTEIN
1ut7_A2e-14815120167NO APICAL MERISTEM PROTEIN
1ut7_B2e-14815120167NO APICAL MERISTEM PROTEIN
3swm_A2e-14815123170NAC domain-containing protein 19
3swm_B2e-14815123170NAC domain-containing protein 19
3swm_C2e-14815123170NAC domain-containing protein 19
3swm_D2e-14815123170NAC domain-containing protein 19
3swp_A2e-14815123170NAC domain-containing protein 19
3swp_B2e-14815123170NAC domain-containing protein 19
3swp_C2e-14815123170NAC domain-containing protein 19
3swp_D2e-14815123170NAC domain-containing protein 19
4dul_A2e-14815120167NAC domain-containing protein 19
4dul_B2e-14815120167NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G143800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6051820.0KR605182.1 Manihot esculenta NAC transcription factors 44 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021604993.10.0NAC domain-containing protein 41-like
TrEMBLA0A2C9WM250.0A0A2C9WM25_MANES; Uncharacterized protein
STRINGcassava4.1_021626m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1653238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-17NAC domain containing protein 2