PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G057100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 313aa    MW: 34873.8 Da    PI: 4.7244
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G057100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.14.8e-30147205259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s  gC ++k+vers+ dp+v+++tY+ eH h 
  Manes.01G057100.1.p 147 SDMWAWRKYGQKPIKGSPYPRNYYRCSSLkGCLARKHVERSSADPSVFIVTYTAEHSHA 205
                          79*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-31132207IPR003657WRKY domain
SuperFamilySSF1182908.24E-26140207IPR003657WRKY domain
PROSITE profilePS5081132.305141207IPR003657WRKY domain
SMARTSM007742.1E-35146206IPR003657WRKY domain
PfamPF031061.5E-24148204IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGQFTFMEDW DLQAVVRGCS SEAFANIMND SPPLFTPLNL DPDELFSFPE IFDTTTDYNG  60
QEDIYEPLCS LHQESISSSS DVNVTSSVSL PICKVKEPEK LQKKHPRSES AAPGSSSDTA  120
VAAKSKRSRK NQQKRVVNHV TEDGLSSDMW AWRKYGQKPI KGSPYPRNYY RCSSLKGCLA  180
RKHVERSSAD PSVFIVTYTA EHSHARPTRR NSLAGTTRIK SSMAKQAISN EPNSPIIKDE  240
CLDTVPSSTT LSMASKDELV PDVRIKNEEE GEEEQISNEI VMPDIIFSDD LFPSFEDFEE  300
LNMEHGFAAT VD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-19135207274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G057100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8275870.0KT827587.1 Manihot esculenta WRKY transcription factor 12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021629168.10.0probable WRKY transcription factor 29 isoform X1
TrEMBLA0A140H8L60.0A0A140H8L6_MANES; WRKY transcription factor 12
STRINGcassava4.1_020980m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.14e-50WRKY family protein
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]