PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_76486.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 291aa    MW: 31610.1 Da    PI: 4.556
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_76486.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.6e-112212611055
                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   r+RR+riN+++ +L++l+P+      +K++ +++Le+Av+Y+k Lq
  MLOC_76486.1 221 RKRRERINERLKTLQTLVPNG-----TKVDMSTMLEEAVQYVKFLQ 261
                   9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.637211260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-15213277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-13216274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-12217266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-13220265No hitNo description
PfamPF000107.4E-9221261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEAGGLISEA GWTMFDFLPQ GEESDIMAQL LGTFPSSHVE EAQQDLPWYQ ASHPSYYDTD  60
VHTSACSDSN ASSFAVPSEC MGYYLGDSSE ALGISSCTTP QDLNLVQEQG ATEFLNMIPS  120
ISHDLFGNGE SSCEGLDSAS ATNKRKHSVE EEIDGQAKGR KCARKAAPKR AKNGKQTEAS  180
CCTSDNDSNA SQESADAGVT PKGKARAGRG AATDPQSLYA RKRRERINER LKTLQTLVPN  240
GTKVDMSTML EEAVQYVKFL QLQIKVLSSD EMWMYAPIAY NGMNIGLDLN M
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_76486.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192439.10.0transcription factor SPATULA-like
TrEMBLA0A3B6LH670.0A0A3B6LH67_WHEAT; Uncharacterized protein
TrEMBLA0A446TX140.0A0A446TX14_TRITD; Uncharacterized protein
STRINGMLOC_76486.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-45bHLH family protein