PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_75448.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 338aa    MW: 37614.6 Da    PI: 6.9811
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_75448.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07221626
                  -SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                  C  f+++G C+yG+rC++ H+
  MLOC_75448.2  2 CT-FYQNGVCSYGSRCRYEHV 21
                  55.6666***********996 PP
2zf-CCCH216.1e-07106127426
                   ---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                   ++C+ fa+ GtC+yG+ C+  Hg
  MLOC_75448.2 106 PICS-FAAAGTCPYGEECPQTHG 127
                   5788.*************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.61123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4120IPR000571Zinc finger, CCCH-type
SMARTSM003560.15122IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-5221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.329102129IPR000571Zinc finger, CCCH-type
SMARTSM003560.054103128IPR000571Zinc finger, CCCH-type
SuperFamilySSF578505.55E-13155235No hitNo description
Gene3DG3DSA:3.30.40.101.8E-11164230IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001625.63E-4170231No hitNo description
SMARTSM001848.8E-7171228IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.416171229IPR001841Zinc finger, RING-type
PfamPF000971.5E-7171228IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180195204IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010312.277258287IPR000571Zinc finger, CCCH-type
SMARTSM003560.058258286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
VCTFYQNGVC SYGSRCRYEH VDVSSEYTPA STTAALAPSN SYRSWCPFYE GEIDVSNQTH  60
KSLSACSVRQ STWRFDDEDS IPEDGNSLLS ALNAQNQARH PLAHLPICSF AAAGTCPYGE  120
ECPQTHGDLC TTCGKQCLHP YRPSEGGAHI KLCKRNNKRL EALKKSEEIE CSVCLDRVLS  180
KPTAAEKRFG LLPECDHAFC ITCIRKWRSS SLTSSMDMDS TVKACPICRK VSYYVIPSAT  240
WYSSKEEKQD IIDGYKAKLK SIDCRYFDFG RDTCPFGGRC FYKHAYTDGC LEEPATVAVL  300
HFHADNGSME GARNIGLVLS ISLLYIMCNL CLLSDGKF
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_75448.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3631870.0AK363187.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2013F15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192975.10.0E3 ubiquitin-protein ligase makorin-like isoform X4
RefseqXP_020192977.10.0E3 ubiquitin-protein ligase makorin-like isoform X4
SwissprotQ5ZA071e-129C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A287UL420.0A0A287UL42_HORVV; Uncharacterized protein
STRINGMLOC_75448.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-97C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]