PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_72940.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 443aa    MW: 46424.6 Da    PI: 7.1064
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_72940.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.47.2e-053303651454
                   HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   +++ +++  L++l+ +      +K + a++L +++eYIk L
  MLOC_72940.2 330 EKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 365
                   67779999999999998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.23316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.08E-5328369No hitNo description
SuperFamilySSF474591.15E-10328384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-8330370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MGDNQLMHAA PAMYNGGGGG GAVSHGMWWN SNAAAGAVPA AACSTELAGF NTWPAGLSAG  60
GYDVAAADGG KQAKSCTTTA SSESPGNNSS ITFQETASIN DPAAAGFADW NNPYMSSGAG  120
NNMHGFLQVG HHDMSSRADQ QSMMNAVAAA PNNLDLALQG HQQHHHHQQQ DDHQRQQQLL  180
SSLGAPELLL SPNSPYGFQS SLLRSLIEPT GKPAPAAGAP PQYQYQQMGG QTGAREPLQF  240
TNNDAAFWNQ SAGFGMGMPA PPASDNAGVR AAKQASPAPR GANLALKTVL EGVGDSSSIV  300
AKKASGEPAF KKPRTEMPSP LPTFKVVRKE KLGDRITALQ QLVSPFGKTD TASVLHETIE  360
YIKFLHDQVG VLSAPYLKSG HHQHQVPQYL KSSSNGSPDK SCKDGGEVSL KGRGLCLVPI  420
SSTFAVASDV PVDFWTPFAP QFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_72940.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3643030.0AK364303.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023J11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168093.10.0transcription factor bHLH112-like
TrEMBLA0A287JL770.0A0A287JL77_HORVV; Uncharacterized protein
STRINGMLOC_72940.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.11e-43bHLH family protein