PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_71897.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | WRKY | ||||||||
Protein Properties | Length: 181aa MW: 19744 Da PI: 8.7561 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 88.8 | 4.5e-28 | 119 | 180 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYGqK++ g+++pr+YYrCt++ gC+++k+v+r++edp +++++Y+g+H+++ MLOC_71897.2 119 VDDGHSWRKYGQKDILGAKHPRAYYRCTHRnsqGCTATKQVQRADEDPVLFDVVYHGQHTCR 180 59***************************98889**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.0E-28 | 114 | 180 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.251 | 114 | 177 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-25 | 117 | 180 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-39 | 119 | 181 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.1E-27 | 120 | 180 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MESVEGNGTG RGNLQLVVSE LCRIQELVRQ LELHLHAPDT SVDLCRALTA QIFALTDRSI 60 GFVAAAHSSD APTTPSSTSS SLSGVSDQPF RTNTKKRKAT ARWTSQVRVS AAGGAEGPVD 120 DGHSWRKYGQ KDILGAKHPR AYYRCTHRNS QGCTATKQVQ RADEDPVLFD VVYHGQHTCR 180 P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 5e-24 | 119 | 180 | 8 | 69 | OsWRKY45 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_71897.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK361795 | 0.0 | AK361795.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1149F05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187901.1 | 1e-115 | probable WRKY transcription factor 41 | ||||
Swissprot | Q8H0Y8 | 7e-40 | WRK41_ARATH; Probable WRKY transcription factor 41 | ||||
TrEMBL | B2KJ72 | 1e-130 | B2KJ72_HORVV; WRKY transcription factor 30 (Fragment) | ||||
TrEMBL | F2DD28 | 1e-129 | F2DD28_HORVV; Predicted protein (Fragment) | ||||
STRING | MLOC_71897.2 | 1e-133 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1086 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.2 | 6e-40 | WRKY family protein |
Publications ? help Back to Top | |||
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