PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_70302.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 168aa MW: 18662.4 Da PI: 7.363 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.5 | 3.7e-10 | 25 | 84 | 4 | 63 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 + +rk +NR++ArrsR +++++ L+ ++++Le N+a++ + ++++++ +++++ MLOC_70302.1 25 ERQRKRKTSNRLSARRSRVKRQQREGSLTARAAQLEIDNEAMRVTTALMQQQCSLVQQQN 84 4567999**************************************999999999877776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.9E-9 | 22 | 83 | No hit | No description |
SMART | SM00338 | 2.7E-8 | 22 | 86 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.5E-7 | 24 | 84 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.956 | 24 | 87 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.63E-7 | 26 | 81 | No hit | No description |
CDD | cd14702 | 9.07E-10 | 27 | 73 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 29 | 44 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 168 aa Download sequence Send to blast |
MEMVPPAAAA AAAPPRRGGA ITEEERQRKR KTSNRLSARR SRVKRQQREG SLTARAAQLE 60 IDNEAMRVTT ALMQQQCSLV QQQNRVLSAD ARYLYSLLEQ QNSQLRVLGE LAGVPMDVQE 120 IPVHLTQLYG GLQSPLAPPL SLPPEIQMLL QPDQLDDIMD DAGSLPWL |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 26 | 31 | QRKRKT |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_70302.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK250808 | 0.0 | AK250808.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf88n03, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164955.1 | 2e-79 | ocs element-binding factor 1-like | ||||
TrEMBL | M0YKQ6 | 1e-115 | M0YKQ6_HORVV; Uncharacterized protein | ||||
STRING | MLOC_70302.1 | 1e-116 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12504 | 28 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G62420.1 | 8e-11 | basic region/leucine zipper motif 53 |