PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_66934.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | Trihelix | ||||||||
Protein Properties | Length: 441aa MW: 49922.6 Da PI: 6.5798 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 76.5 | 4.1e-24 | 119 | 214 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdql 85 +Wt ++v++Li+a ++++e+ +++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++t ++++ + +++d + MLOC_66934.1 119 KWTGSMVKLLITAASYTGEDPGADLgggrrnitvmQKKGKWKAISKVMGERGCNVSPQQCEDKFNDLNKRYKRLTDILGRGTaCTVVDNPALLDCM 214 7*********************8744455667777*********************************************9548888887777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.9E-18 | 117 | 238 | No hit | No description |
CDD | cd14686 | 0.00555 | 393 | 431 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MDRSNLPPGN PTQGTPYGSL NVHGNSMQMH APSSGKHLFN QSQMPGSFTM PINRATEHDN 60 PGSGFQFVEH GKKDHHQQQQ HNHLIKNSIS DGEEHDVTED TTDAQSGKGK KGSAWHRMKW 120 TGSMVKLLIT AASYTGEDPG ADLGGGRRNI TVMQKKGKWK AISKVMGERG CNVSPQQCED 180 KFNDLNKRYK RLTDILGRGT ACTVVDNPAL LDCMSNLSDK MKEDARKILN SKHLFYEMMC 240 SYHNNNRVNL PEDLALQHSL QVALRCKEEH DPRRDASGDA EEDEQSADSD YEDHDEEHQA 300 VHHSMRDPSM NKRMCHALDH GDAGFVTSSS NDGSGSLDPH GIALDINKAL LDGTNLSVLR 360 KELASQAIEL RKRRLQIEAQ ELEVTEQRLK WERFRRKKDR EIERMESENE DMLLENKRLE 420 LQLKHKELEV ELKLKGNPDH E |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_66934.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK371200 | 0.0 | AK371200.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2127P16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187300.1 | 0.0 | stress response protein NST1-like | ||||
TrEMBL | M0Y999 | 0.0 | M0Y999_HORVV; Uncharacterized protein | ||||
STRING | MLOC_66934.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2920 | 38 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 2e-93 | sequence-specific DNA binding transcription factors |