PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_6565.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | GeBP | ||||||||
Protein Properties | Length: 322aa MW: 35478.6 Da PI: 6.529 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 49.8 | 9.5e-16 | 134 | 222 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 f+r+ws +De+ +L++l ++++g+ p+ da++e + ++++ + +s+++l K+++LK+++ kk +kehd+ f+lsk +W MLOC_6565.1 134 FHRVWSTNDEVRILKALAAHQKEHGVLPQP--DALVEALAGKLDNRaYSSKELQGKVKSLKHRYVSAAKK-----YELPTKEHDRRLFDLSKTVWA 222 89***********************77666..5899***999987526899*****************99.....345689**************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.7E-20 | 134 | 221 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MGKKRGEKRS APPPPPPAAS SEETHSGAHE SEDEETIAVS RTPAPKNPPP PPQKGKESEA 60 SDEDEEEEEE EPSHAAPTTA PKKDPPAARQ SEDSDNSNDD EDGGSGSDKD APPPKPSVKQ 120 QAKGPEVKVP RLAFHRVWST NDEVRILKAL AAHQKEHGVL PQPDALVEAL AGKLDNRAYS 180 SKELQGKVKS LKHRYVSAAK KYELPTKEHD RRLFDLSKTV WARDKSMARA ATAPTAGATA 240 KANNHEPKGF DEMCELYPYL AEEVRKLGAP GMFKREFGKM DDDKARLLDE KIKKQRVAQM 300 KVELHRSDLA REVTKAVMDL ID |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_6565.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249276 | 0.0 | AK249276.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf33f24, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179917.1 | 1e-136 | STOREKEEPER protein-like | ||||
TrEMBL | A0A287W6F7 | 0.0 | A0A287W6F7_HORVV; Uncharacterized protein | ||||
STRING | MLOC_6565.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6729 | 27 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G11510.1 | 1e-07 | DNA-binding storekeeper protein-related transcriptional regulator |