PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_6525.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family SBP
Protein Properties Length: 396aa    MW: 42554.1 Da    PI: 9.0162
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_6525.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.89.8e-41174250177
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                  +Cqve+C+adls ak+yhrrhkvCe h+ka+ v ++g++qrfCqqCsrfh l efDe+krsCrrrLa+hn+rrrk++
  MLOC_6525.1 174 RCQVEDCKADLSGAKHYHRRHKVCEYHAKAALVSTAGKQQRFCQQCSRFHVLMEFDEAKRSCRRRLAEHNRRRRKPA 250
                  6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.4E-34167236IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.376172249IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.53E-38173252IPR004333Transcription factor, SBP-box
PfamPF031101.0E-30175248IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MMSGGRMNGP ASDDFPFGAM QPPPYVGFEH AGGGGGQRHQ GAMMYDNFDF AVAAAAFGQF  60
QDAPHHQMLA MPPNGSGAGG LVPMAPPPMP MPGMQLQMPP MPHGMHGHGD VCPSMGMVKR  120
EGGAGDAGRI GLNLGRRTYF SPGDMMAVDR VLMRSRLGGV FGLGFGRAHQ QAPRCQVEDC  180
KADLSGAKHY HRRHKVCEYH AKAALVSTAG KQQRFCQQCS RFHVLMEFDE AKRSCRRRLA  240
EHNRRRRKPA AGSTATSSKD SAPPSKKPNA GAICSSYTGD NSTLSATKST ISSNTSAISC  300
LQLQGQARAA AAARPTALTL GAPPEKDDQQ QQFRNAMQLH HHQEHQHFIT SLLHGNINNS  360
NILSCSSVSS NTMPSAVAAN GEDDNNNMHM FEVDFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-301752481184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231248KRSCRRRLAEHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_6525.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3764430.0AK376443.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3124E22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146777.10.0squamosa promoter-binding-like protein 10
SwissprotA2YFT91e-98SPL10_ORYSI; Squamosa promoter-binding-like protein 10
SwissprotQ0DAE81e-98SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBLA0A287XTB10.0A0A287XTB1_HORVV; Uncharacterized protein
STRINGMLOC_6525.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.14e-35squamosa promoter binding protein-like 8