PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_51604.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 286aa    MW: 30850 Da    PI: 6.8055
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_51604.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.42.3e-1551102155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  MLOC_51604.1  51 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 102
                   57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.72E-2451112No hitNo description
SuperFamilySSF541713.79E-1851112IPR016177DNA-binding domain
PfamPF008472.8E-1051102IPR001471AP2/ERF domain
PROSITE profilePS5103218.95352110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-1852111IPR001471AP2/ERF domain
SMARTSM003801.1E-3352116IPR001471AP2/ERF domain
PRINTSPR003677.4E-55364IPR001471AP2/ERF domain
PRINTSPR003677.4E-592112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAALKYWGPT TTTNFPVSNY EKELEEMKSM TRQEFIASLR RKSSGFSRGA SIYRGVTRHH  60
QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLSAVTNFD MSRYDVESIL  120
NSDLPIGAGA AARASKFQPD VLSLPAPNVA SPDMLPPAEK DYWSLLAMHY QQQQQQHLQQ  180
YPASAFETYG SGVNVDFTMG MGSANNASGG ATVWGTTGAT GHGDVGSRQS NSYSSNIPYA  240
SMVSGSGATA TGGYEGSTGN NGTWVTTSNP ASTTAPQYYN YLFGME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_51604.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1019591e-136AK101959.1 Oryza sativa Japonica Group cDNA clone:J033075O07, full insert sequence.
GenBankHQ8588431e-136HQ858843.1 Oryza sativa Japonica Group isolate UT1531 AP2-EREBP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183528.11e-179AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-77AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A287XTI60.0A0A287XTI6_HORVV; Uncharacterized protein
STRINGMLOC_51604.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.16e-75AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]