PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_51032.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 381aa MW: 42673.4 Da PI: 8.7791 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.3 | 3.2e-06 | 82 | 104 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cg +F+ + +Lk+H+++H MLOC_51032.8 82 HDCKECGARFKKPAHLKQHMQSH 104 56*******************99 PP | |||||||
2 | zf-C2H2 | 19.5 | 2.6e-06 | 110 | 134 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + C+ C+ s+srk++L+rH+ tH MLOC_51032.8 110 FACHvdGCPFSYSRKDHLNRHLLTH 134 78*********************99 PP | |||||||
3 | zf-C2H2 | 19.7 | 2.2e-06 | 176 | 200 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp +Cgk F+ s L++H +H MLOC_51032.8 176 FICPeaNCGKAFKYASKLQKHEESH 200 78*******************9988 PP | |||||||
4 | zf-C2H2 | 16.1 | 3.2e-05 | 268 | 291 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirt.H 23 C+ dC+ sFs ksnL++Hi+ H MLOC_51032.8 268 CSfkDCKHSFSKKSNLHKHIKAvH 291 8888****************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 9.5 | 30 | 52 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 0.0037 | 82 | 104 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 14.191 | 82 | 109 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.6E-5 | 83 | 100 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 84 | 104 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.7E-12 | 94 | 136 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.5E-14 | 101 | 136 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0018 | 110 | 134 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.307 | 110 | 139 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 112 | 134 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.2E-6 | 137 | 165 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.36E-6 | 138 | 165 | No hit | No description |
SMART | SM00355 | 0.015 | 139 | 164 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 141 | 164 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.4E-8 | 170 | 200 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.14E-5 | 172 | 202 | No hit | No description |
PROSITE profile | PS50157 | 11.323 | 176 | 200 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0047 | 176 | 200 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 178 | 200 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.5 | 208 | 233 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 210 | 233 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 31 | 236 | 257 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.4E-5 | 247 | 288 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.26E-7 | 247 | 304 | No hit | No description |
SMART | SM00355 | 0.086 | 266 | 291 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.424 | 266 | 296 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 268 | 291 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.6E-4 | 290 | 319 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 4.8 | 297 | 323 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.6 | 297 | 323 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 299 | 323 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MGEADPDGGG VLGATVTSAA AAPVRDIRRY KCEFCGVVRS KKRLIRDHVL EHHKDEAGGL 60 DEYDVGGGGG GGGGAPGKGI GHDCKECGAR FKKPAHLKQH MQSHSPERPF ACHVDGCPFS 120 YSRKDHLNRH LLTHEGKLFI CPVEGCNHKF SIKGNIQRHV QEFHKDGPQF GGKKEFICPE 180 ANCGKAFKYA SKLQKHEESH VKLDYTEVIC CEPGCMKTFT NVECLKAHNQ SCHQYVQCDT 240 CETKQLKKNF KRHQRMHEGS LVTERINCSF KDCKHSFSKK SNLHKHIKAV HEQSRPFTCG 300 FSGCGQKFSY KHVRDNHEKS SVHVLFESDF VEADEQLRPH PGGRKRKPIS VDTLMRKRVA 360 APDAPPAYSD GTEYLRWLLS G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tf6_A | 2e-18 | 86 | 270 | 19 | 172 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
1tf6_D | 2e-18 | 86 | 270 | 19 | 172 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_51032.8 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372817 | 0.0 | AK372817.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3013K06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566649.1 | 0.0 | transcription factor IIIA isoform X1 | ||||
Swissprot | Q84MZ4 | 1e-115 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A3B5XU91 | 0.0 | A0A3B5XU91_WHEAT; Uncharacterized protein | ||||
STRING | MLOC_51032.8 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2382 | 38 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 1e-116 | transcription factor IIIA |