PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_43438.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 303aa    MW: 32553.5 Da    PI: 7.9182
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_43438.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.2e-10105152455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  MLOC_43438.1 105 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 152
                   8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-1799170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.92E-1099156No hitNo description
PROSITE profilePS5088815.256101151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-17102169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-7105152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10107157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MALKGASDGN ARKRKAAGGS KGKGKDASVS TTSAKDLLAK EDSSSKRCKS MSMEDGEENS  60
GKGKAAQSSS ENGGKKQGKD GASKLPEPPK DFIHVRARRG EATDSHSLAE RVRREKISQR  120
MKLLQDLVPG CNKVVGKAVM LDEIINYVQS LQRQVEFLSM KLATVNPQLD FNNLPNLLAK  180
DMQQQSCGQL QQGSSHFPLE ASGAALPYMG QGNNDHLGGC GMSDGGMGDD QGAMHPLDQA  240
FCRPMGSQQQ QQHFLSDAAS QVGAFWQDLQ SVVQMDMGQS QEIATSSNSY DGSLQTVHMK  300
MEL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_43438.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546280.0AK354628.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009E13.
GenBankAK3619380.0AK361938.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155800.10.0transcription factor bHLH77-like isoform X2
TrEMBLA0A287MBH70.0A0A287MBH7_HORVV; Uncharacterized protein
TrEMBLA0A287MBI50.0A0A287MBI5_HORVV; Uncharacterized protein
STRINGMLOC_43438.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-56bHLH family protein