PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_40535.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 155aa MW: 17098.2 Da PI: 5.2978 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43 | 8.4e-14 | 98 | 144 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er+RRd++N +f Lr +P+ +++Ka+ L Av YI +L MLOC_40535.1 98 VSHVEAERQRRDKLNRRFCDLRAAVPTV-----SRMDKASLLADAVAYITEL 144 589************************6.....4***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.205 | 95 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-16 | 96 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.26E-12 | 98 | 149 | No hit | No description |
Pfam | PF00010 | 2.6E-11 | 98 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-16 | 99 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-11 | 101 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MDELLSPCSP FFPPSPPTQF STAEGSHHQL LEFASCEVPE QWLLGDTAVP AKSEDVDFLW 60 PAGSSSLSPD SELPPASTTT PTKRRGRKPV PRPDGLTVSH VEAERQRRDK LNRRFCDLRA 120 AVPTVSRMDK ASLLADAVAY ITELRSRVAR LEEEG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 8e-22 | 98 | 154 | 7 | 63 | Transcription factor MYC2 |
5gnj_B | 8e-22 | 98 | 154 | 7 | 63 | Transcription factor MYC2 |
5gnj_E | 8e-22 | 98 | 154 | 7 | 63 | Transcription factor MYC2 |
5gnj_F | 8e-22 | 98 | 154 | 7 | 63 | Transcription factor MYC2 |
5gnj_G | 8e-22 | 98 | 154 | 7 | 63 | Transcription factor MYC2 |
5gnj_I | 8e-22 | 98 | 154 | 7 | 63 | Transcription factor MYC2 |
5gnj_M | 8e-22 | 98 | 154 | 7 | 63 | Transcription factor MYC2 |
5gnj_N | 8e-22 | 98 | 154 | 7 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_40535.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726971 | 4e-59 | KJ726971.1 Zea mays clone pUT3672 bHLH transcription factor (bHLH95) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194713.1 | 6e-83 | transcription factor bHLH14-like | ||||
TrEMBL | A0A287RYK0 | 1e-107 | A0A287RYK0_HORVV; Uncharacterized protein | ||||
STRING | MLOC_40535.1 | 1e-108 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32640.1 | 1e-20 | bHLH family protein |