PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10687.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 334aa    MW: 36662.9 Da    PI: 8.9414
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10687.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.1e-32117172359
                   -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   DgynWrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve++  d+++ ei+Y+geHnh+
  MLOC_10687.2 117 DGYNWRKYGQKQVKGSEFPRSYYKCTHPTCPVKRKVETTV-DGQIAEIVYNGEHNHP 172
                   9***************************************.***************8 PP
2WRKY863.4e-27278331459
                   SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   4 gynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    ++WrKYGqK v+g+ fprsYYrC++a+C+++k vers+ d + +++tYeg+Hnh 
  MLOC_10687.2 278 AFRWRKYGQKAVNGNSFPRSYYRCSTARCNARKFVERSS-D-NSLVTTYEGKHNHA 331
                   69*************************************.4.567799*******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.756110174IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.3E-28110174IPR003657WRKY domain
SuperFamilySSF1182907.85E-25111174IPR003657WRKY domain
SMARTSM007741.2E-34115173IPR003657WRKY domain
PfamPF031061.7E-24117172IPR003657WRKY domain
PROSITE profilePS5081122.825270330IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.7E-25273332IPR003657WRKY domain
SMARTSM007741.0E-27275332IPR003657WRKY domain
SuperFamilySSF1182903.92E-21276331IPR003657WRKY domain
PfamPF031063.2E-22278330IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MQSQEKITPV KPVASRPFSS FTSFSKLLED FTGTGSAQIT SLGETVIVRR PKVTRFAPPP  60
SDLSAGIAAT MFQDAGLDTT REQMVIDPEQ VVSCDQMTAF HNINKPIHSM KNRLSYDGYN  120
WRKYGQKQVK GSEFPRSYYK CTHPTCPVKR KVETTVDGQI AEIVYNGEHN HPQPHPPKKP  180
TSSASTEVLV PGAHGSNDAG AESQVGGCNL VLGSAPVATA FRSSCDCVDE FGNTSPVYHC  240
NTSRKEKQSS ITNGLTSSSE AAPAFQSPTE CESSRDAAFR WRKYGQKAVN GNSFPRSYYR  300
CSTARCNARK FVERSSDNSL VTTYEGKHNH AQLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-181173301877Probable WRKY transcription factor 4
2lex_A1e-181173301877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10687.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8631230.0DQ863123.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 40 (WRKY40) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177870.10.0WRKY transcription factor 44-like
TrEMBLM0UGA70.0M0UGA7_HORVV; Uncharacterized protein
STRINGMLOC_10687.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.17e-57WRKY family protein