PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C025864P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C2H2 | ||||||||
Protein Properties | Length: 388aa MW: 42551.9 Da PI: 8.1339 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.1e-05 | 150 | 173 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+ F+ + +L++H++ H MELO3C025864P1 150 FPCTACGEIFPKSQLLEQHQSIkH 173 89******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.868 | 150 | 178 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 152 | 173 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 1.63E-12 | 176 | 386 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 4.6E-6 | 177 | 292 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene3D | G3DSA:3.90.228.10 | 2.3E-4 | 322 | 386 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MQNSLIPFFS FIPMAPILPP SLPNKLLPLF LILLLHLVAA SSSPPPPPPA PAPAFPFRRP 60 RPPPSCFKPR NSLSSSFSFL KRIFSSKTCT MAIQTAPPPS TPARSSQHSI LTLVQPEIPP 120 PSPAVETHPQ DSDITASETD QFFPLRNDIF PCTACGEIFP KSQLLEQHQS IKHAVSELAD 180 SDSGKNIVRI IFETGWRSRE KSPKILRILK IHNSQKILSR FEEYRESVKA KAARHGGVKR 240 RDERCIADGN ELLRFHCSTF LCDLGQNGNS SICGQQFCSI CGIIKSGFSH KLDGISTVAS 300 SWRAHVAIPE DIEEEFKFLN VKRAILVCRV VAGRVGCDAD EPEKDGGGFD SVVGRSGSGA 360 QSTLDEEELL VFNPRAVLPC FAIVYEI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681919 | 0.0 | LN681919.1 Cucumis melo genomic scaffold, anchoredscaffold00084. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008464051.1 | 0.0 | PREDICTED: uncharacterized protein LOC103502032 | ||||
TrEMBL | A0A1S3CKL2 | 0.0 | A0A1S3CKL2_CUCME; uncharacterized protein LOC103502032 | ||||
STRING | XP_008464051.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10668 | 29 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29660.1 | 1e-112 | C2H2 family protein |