PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C025864P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 388aa    MW: 42551.9 Da    PI: 8.1339
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C025864P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-05150173123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C+ Cg+ F+ + +L++H++  H
  MELO3C025864P1 150 FPCTACGEIFPKSQLLEQHQSIkH 173
                     89******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.868150178IPR007087Zinc finger, C2H2
PROSITE patternPS000280152173IPR007087Zinc finger, C2H2
SuperFamilySSF563991.63E-12176386No hitNo description
Gene3DG3DSA:3.90.228.104.6E-6177292IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.102.3E-4322386IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MQNSLIPFFS FIPMAPILPP SLPNKLLPLF LILLLHLVAA SSSPPPPPPA PAPAFPFRRP  60
RPPPSCFKPR NSLSSSFSFL KRIFSSKTCT MAIQTAPPPS TPARSSQHSI LTLVQPEIPP  120
PSPAVETHPQ DSDITASETD QFFPLRNDIF PCTACGEIFP KSQLLEQHQS IKHAVSELAD  180
SDSGKNIVRI IFETGWRSRE KSPKILRILK IHNSQKILSR FEEYRESVKA KAARHGGVKR  240
RDERCIADGN ELLRFHCSTF LCDLGQNGNS SICGQQFCSI CGIIKSGFSH KLDGISTVAS  300
SWRAHVAIPE DIEEEFKFLN VKRAILVCRV VAGRVGCDAD EPEKDGGGFD SVVGRSGSGA  360
QSTLDEEELL VFNPRAVLPC FAIVYEI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819190.0LN681919.1 Cucumis melo genomic scaffold, anchoredscaffold00084.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464051.10.0PREDICTED: uncharacterized protein LOC103502032
TrEMBLA0A1S3CKL20.0A0A1S3CKL2_CUCME; uncharacterized protein LOC103502032
STRINGXP_008464051.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106682936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-112C2H2 family protein