PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C025726P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | AP2 | ||||||||
Protein Properties | Length: 498aa MW: 54238.8 Da PI: 6.7943 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.6 | 5.6e-17 | 156 | 205 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g MELO3C025726P1 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 205 78*******************......55************************997 PP | |||||||
2 | AP2 | 40.9 | 5.1e-13 | 248 | 298 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ k +g MELO3C025726P1 248 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDKAAIKCNG 298 89********.7******...5...334336**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.1E-9 | 156 | 205 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-16 | 156 | 214 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.36E-23 | 157 | 215 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.4E-17 | 157 | 214 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.3E-32 | 157 | 219 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.649 | 157 | 213 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-8 | 248 | 298 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-17 | 248 | 307 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.31E-26 | 248 | 308 | No hit | No description |
PROSITE profile | PS51032 | 15.54 | 249 | 306 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.9E-16 | 249 | 306 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.5E-33 | 249 | 312 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-6 | 250 | 261 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-6 | 288 | 308 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MFDLNLNVDS PDAAQNEDSV VFFEKLPQGS GNQMDESGTS NSSIVNADTS SNGGDDDSCS 60 TRAGGELFTF NFEILKAGSA NDVVTKELFP IGGTVNADFG ILQGHNSASS SSTSSRKNWI 120 NLAFDRSGSA GEGRTVQPVQ PQPVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ 180 VYLGGFDTAH SAARAYDRAA IKFRGVDADI NFNLSDYEDD LKQMKNLSKE EFVHILRRQS 240 TGFSRGSSKY RGVTLHKCGR WEARMGQLLG KKYIYLGLFD SEVEAARAYD KAAIKCNGRE 300 AVTNFEPSTY GERISEGSSE GGWNMLDLNL GISPPSLDNS PKDSEGHLRF QSGSCYANDR 360 STMMESNADA AVGDPPMKGP VITSEHAPLW NGLQTSFFPS EEIVTEKRLA LGSSQGIPPN 420 WGWQIHSQVN ATQVPLFSAA ASSGFSFSAT HFPAAIHPLC RPGSTAHNLH FTTPKASSLN 480 SPQYHDHHQL NPQQAPP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681922 | 0.0 | LN681922.1 Cucumis melo genomic scaffold, anchoredscaffold00082. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008463879.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 | ||||
Swissprot | Q9SK03 | 1e-121 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A1S3CKA6 | 0.0 | A0A1S3CKA6_CUCME; ethylene-responsive transcription factor RAP2-7 isoform X1 | ||||
STRING | XP_008463879.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2807 | 34 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-132 | related to AP2.7 |