PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C019590P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 256aa    MW: 28326.8 Da    PI: 7.8599
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C019590P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.3e-20105154255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +grW+Ae+rdp        kr++lg+f+taeeAa+ +++a+ +l g
  MELO3C019590P1 105 KFRGVRQRP-WGRWAAEVRDP-----IlrKRIWLGTFDTAEEAAAVYDRAAIELQG 154
                     89*******.**********8.....446************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.2E-511252IPR017392AP2/ERF transcription factor ERF/PTI6
SuperFamilySSF541715.23E-21105162IPR016177DNA-binding domain
CDDcd000186.49E-31105161No hitNo description
PROSITE profilePS5103222.972105162IPR001471AP2/ERF domain
PfamPF008479.9E-13105154IPR001471AP2/ERF domain
SMARTSM003802.0E-32105168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-28105162IPR001471AP2/ERF domain
PRINTSPR003671.3E-10106117IPR001471AP2/ERF domain
PRINTSPR003671.3E-10128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MSVGDMASLS EHKTNCRRKA LTSGDSTKPK QRLLRIIVTD ADATDSSSED ELILGSRTTI  60
RRQVREITIK RHSVADSSPK SPVSEICKKR NPRSRRSNNS SRRNKFRGVR QRPWGRWAAE  120
VRDPILRKRI WLGTFDTAEE AAAVYDRAAI ELQGPNAATN FSGDGAVKTA VDGGSKKEDG  180
VESRKTTAAW SPTSVLHYDS FLTPIEEMVY CGEVDELGLE MAAASLPAAR RQCCGEEDLG  240
EMELDLDYFL VDVIY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-17106161662ATERF1
3gcc_A4e-17106161662ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819210.0LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016901953.10.0PREDICTED: ethylene-responsive transcription factor ERF069-like
TrEMBLA0A1S4E1550.0A0A1S4E155_CUCME; ethylene-responsive transcription factor ERF069-like
STRINGXP_008456258.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.19e-21cytokinin response factor 4