PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C018916P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bZIP
Protein Properties Length: 165aa    MW: 19249.4 Da    PI: 6.8922
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C018916P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.73.5e-1581130554
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                     +++rr+++NRe+ArrsR RK++ ++eL   v  L +eN++L+++l++ ++
  MELO3C018916P1  81 RKQRRMISNRESARRSRMRKQKHLDELWSQVLWLRNENHQLIDKLNQVSE 130
                     689*****************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.8E-1477141IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.46179130IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.11E-1381130No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-1281154No hitNo description
PfamPF001702.4E-1381130IPR004827Basic-leucine zipper domain
CDDcd147021.51E-1882133No hitNo description
PROSITE patternPS0003608499IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MQPGEIASLH YLLSSNPSLY SSQFIMPHDS TNRMHSNQFS NPPSSKFQYP SQVQDMNPPS  60
LSSNSTSDEA EDQQLSLINE RKQRRMISNR ESARRSRMRK QKHLDELWSQ VLWLRNENHQ  120
LIDKLNQVSE CHDRALQENA QLKEEASELR QMLTDFQLHN PYLP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193100RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818700.0LN681870.1 Cucumis melo genomic scaffold, anchoredscaffold00035.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016901802.11e-117PREDICTED: basic leucine zipper 43
SwissprotQ9FMC28e-41BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A1S4E0N41e-115A0A1S4E0N4_CUCME; basic leucine zipper 43
STRINGXP_004137148.11e-104(Cucumis sativus)
STRINGXP_004154731.11e-104(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16043399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.13e-50basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]