PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016852P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 352aa    MW: 39068.8 Da    PI: 7.3034
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016852P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.9e-07121141526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ f++ G Ck Gd+C FaHg
  MELO3C016852P1 121 ACPEFRK-GNCKKGDSCDFAHG 141
                     7******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.2E-5116142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582117143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5120143IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-5121141IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.756151175IPR000571Zinc finger, CCCH-type
SMARTSM0035610151174IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MMIGEQSRFN HTIQVPPWDP LEDHHITGVS SPVFVAGGVD SFIDSFSSIH RYLPSAADSD  60
ELDGVGEAVD GFSCDHFRMF EFKIRRCARG RSHDWTECPY AHPGEKARRR DPRKYHYSGT  120
ACPEFRKGNC KKGDSCDFAH GIFECWLHPA RYRTQPCKDG LACRRRVCFF AHTPEQLRVL  180
PQQSPRTPVS ADSVDGSSRV AHAFDSYFSK GSFVTSPTSI LSTPPVSPPS DSPPLSPNCP  240
FNSMNGLVSC MRNLQLGKLK ATGPHWGRIQ LGSQNPLSPS GSGLYNLPST PTTGNYELWG  300
KNYEEEPAME RVESGRDLRA QMYAKLSKDN SVKEMDSTLT PDVGWVSELL M*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818610.0LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452695.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotO821991e-112C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A1S3BTV60.0A0A1S3BTV6_CUCME; zinc finger CCCH domain-containing protein 20-like
STRINGXP_008452695.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-115C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]