PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C014922P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 225aa MW: 25362.9 Da PI: 10.1255 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 100.2 | 2.9e-31 | 16 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lp+G+rF Ptd+elv +yLk+kv + +l++ ++i+++di+ ++Pw Lp ++++ +fFsk+++ ++r++ g+Wk+ gk+k +ls MELO3C014922P1 16 LPVGYRFCPTDQELVAHYLKRKVFHLPLPA-SIIPDFDIFLTDPWALPG---DSKEKRFFFSKQKSF------SRRSAGCGIWKSIGKEKLILSP 100 799***************************.89***************3...345577888887664......5789999**************9 PP NAM 96 ..kgelvglkktLvfykgr.apkgektdWvmheyrl 128 ++lvg +ktLvf + + ++ + t+Wvmheyrl MELO3C014922P1 101 gpMNQLVGSRKTLVFSESKfCETKSATRWVMHEYRL 136 888899**********7751455578********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.19E-37 | 12 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.348 | 16 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.3E-23 | 17 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MDNISPFVLN GGSIRLPVGY RFCPTDQELV AHYLKRKVFH LPLPASIIPD FDIFLTDPWA 60 LPGDSKEKRF FFSKQKSFSR RSAGCGIWKS IGKEKLILSP GPMNQLVGSR KTLVFSESKF 120 CETKSATRWV MHEYRLPRSA SPTTPNSTQI EVGDWAVYSL FQKRRRPKRQ GVEEKQRLRE 180 AEEASILDLR VEDGWEFPQP SSSSSSGVTE VSSNADFKKS TAVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-22 | 14 | 164 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-22 | 14 | 164 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-22 | 14 | 164 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-22 | 14 | 164 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-22 | 14 | 164 | 18 | 169 | NAC domain-containing protein 19 |
3swm_B | 5e-22 | 14 | 164 | 18 | 169 | NAC domain-containing protein 19 |
3swm_C | 5e-22 | 14 | 164 | 18 | 169 | NAC domain-containing protein 19 |
3swm_D | 5e-22 | 14 | 164 | 18 | 169 | NAC domain-containing protein 19 |
3swp_A | 5e-22 | 14 | 164 | 18 | 169 | NAC domain-containing protein 19 |
3swp_B | 5e-22 | 14 | 164 | 18 | 169 | NAC domain-containing protein 19 |
3swp_C | 5e-22 | 14 | 164 | 18 | 169 | NAC domain-containing protein 19 |
3swp_D | 5e-22 | 14 | 164 | 18 | 169 | NAC domain-containing protein 19 |
3ulx_A | 6e-22 | 12 | 164 | 11 | 169 | Stress-induced transcription factor NAC1 |
4dul_A | 4e-22 | 14 | 164 | 15 | 166 | NAC domain-containing protein 19 |
4dul_B | 4e-22 | 14 | 164 | 15 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 161 | 168 | QKRRRPKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681857 | 1e-144 | LN681857.1 Cucumis melo genomic scaffold, anchoredscaffold00023. | |||
GenBank | LN713260 | 1e-144 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008450148.1 | 1e-159 | PREDICTED: NAC domain-containing protein 83 isoform X2 | ||||
TrEMBL | A0A1S3BPK5 | 1e-158 | A0A1S3BPK5_CUCME; NAC domain-containing protein 83 isoform X2 | ||||
STRING | XP_008450147.1 | 1e-147 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14000.1 | 1e-31 | NAC domain containing protein 84 |