PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C010985P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | DBB | ||||||||
Protein Properties | Length: 306aa MW: 32742.1 Da PI: 6.6038 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.1 | 2.6e-06 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +e+ + fC+ ++ lC+ C H+ H+ MELO3C010985P1 4 QCDVCEKGDAAVFCTADEAALCDLCDHRVHHAnklaskHR 43 7******88*******************964446777776 PP | |||||||
2 | zf-B_box | 25.1 | 3.7e-08 | 54 | 95 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 e+++C+ ++e + lfC++++ lC++C + +H+ H MELO3C010985P1 54 EAPVCDVCKERRGFLFCQQDRAILCRECDDPIHSAneltkkH 95 5789*******9*********************655555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.352 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.80E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 1.6E-6 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.769 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 7.7E-15 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.8E-6 | 54 | 96 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.77E-9 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MKIQCDVCEK GDAAVFCTAD EAALCDLCDH RVHHANKLAS KHRRFSLLRP DAGEAPVCDV 60 CKERRGFLFC QQDRAILCRE CDDPIHSANE LTKKHDRFLL TGIKLSASAA LYAPPPSGEK 120 QIESGGRVVS ASKSKGSVKK VAAVSKVPTI CTPNVCVNAP TNITPAAVVN KGGGGQIATG 180 GGGSASSISE YLMETLPGWH FEDFLDSSVS PPFVEFDDGI GFPFVEGDLN GCFSSSERLE 240 LWVPQGPPAA LYNSGLMMNN GLKDTKELGV NSSKVNREWT DDGFTVPQIT STAPSSGFKR 300 SRPFW* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 0.0 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008444771.1 | 0.0 | PREDICTED: B-box zinc finger protein 20-like | ||||
TrEMBL | A0A1S3BBW0 | 0.0 | A0A1S3BBW0_CUCME; B-box zinc finger protein 20-like | ||||
STRING | XP_008444771.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 2e-64 | salt tolerance homolog2 |