PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009671P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 702aa    MW: 76882.1 Da    PI: 6.549
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009671P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07276296526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f++ G C++Gd C +aHg
  MELO3C009671P1 276 PCPDFRK-GACRRGDMCEYAHG 296
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.95E-166137IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.0E-1812138IPR020683Ankyrin repeat-containing domain
CDDcd002043.25E-1554135No hitNo description
PfamPF127962.0E-956126IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0115787IPR002110Ankyrin repeat
PROSITE profilePS5029716.33557133IPR020683Ankyrin repeat-containing domain
SMARTSM002487.8E-492124IPR002110Ankyrin repeat
PROSITE profilePS5008811.64892127IPR002110Ankyrin repeat
SMARTSM003564.0E-6271297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4276298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582276298IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-5276296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4304334IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.071306330IPR000571Zinc finger, CCCH-type
SMARTSM0035631306329IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MNNLTVETED VFSSLLELAA NDDIDAFKRS IERDPSGIDE IGLWYGRLRG SKQMTNEQRT  60
PLMVAATYGS TEVLKLILSL SCADVNRAVG LDRSTALHCA ASGGAANAVD IVKRLLAAGA  120
DPNMVDENGH RPVDVIVAPL RHGELKSTLA ELLKTNGFSG EGNLDVVTGG RDLHSSRPSS  180
PLNVPCSSEL VSSPTKSKLS DFPMYSASEK KEYPVDLSLP DIKNSIYSTD EFRMYSFKVR  240
PCSRAYSHDW TECPFVHPGE NARRRDPRKF HYSCVPCPDF RKGACRRGDM CEYAHGVFEC  300
WLHPAQYRTR LCKDGTNCSR RVCFFAHTTD ELRPLYVSTG SAVPSPRSCT SGASAMDYTT  360
VMNLLPGSPS SVPVMSPSPF TPPMSPSANG MSHSSVPWPQ PNVPALHLPG SNIQSSRLRS  420
SLSARDMPVE DFDYLSDFDM QQQQLLNDLN CLSQPPLSSN SLNRSGRMKT MTPSNLDDLF  480
SAESSSPRYS DQSLASAVFS PTHKSAVINQ FQQQQNMLSP INTNFSPKNV DHPLLQASFG  540
VPSSGRMSPR NLEPISPVGS RLSMLAQREK QQFRSLSSRE LGANSPSIVG SPANSWSKWG  600
HSNGRPDWAV NADEMGKLRR SSSFELGNNG EEPDLSWVQS LVKESPTEIK EKQAHPNLGV  660
DSFVSSGESS NMNSQMESVD HAALGAWLEQ MQLDHLVAQQ H*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443126.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A1S3B6V10.0A0A1S3B6V1_CUCME; zinc finger CCCH domain-containing protein 30
STRINGXP_008443126.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]