PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C008046P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C3H

Protein Properties

Length: 876aa MW: 97185.7 Da PI: 8.5609

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C008046P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.3e-08	299	320	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ffa+ GtC+ G +CkF+H MELO3C008046P1 299 VICKFFAA-GTCRNGKNCKFSHH 320 589999.***********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	6.7E-7	173	200	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.22	174	201	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0012	174	200	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.66E-5	176	199	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.15	233	260	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.94	233	259	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.403	295	322	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.1E-5	296	321	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.24E-6	297	320	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-5	299	320	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-4	300	321	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 876 aa Download sequence Send to blast
MSGSSKKRTS KWDLREDSHV ETISGQEHGW PGKESRPGWI SPELAGDDGS KWSGMETTIG 60 ISKPKQDWGL LSKESLPGTR ASHKEDYTNK GYNKDMEGTA EWDADDKSYS TRMSPGLDEW 120 RRHRSSLSDR NDGSRSVRGR SRSRSWSRSR SRSRSPHSFK RDSGFHDRNR NRSRVSTQLC 180 REFVSGRCRR GNGCQFLHQD NQNMDDSWES RNRKGGRSLR STPHDFRDYP RSGRAAAQCT 240 DFVKGRCHRG ASCKYPHDSA FHELARGSPN DISRDRENDR SKEAYFSRGE REPGNSSLVI 300 CKFFAAGTCR NGKNCKFSHH SQSRASPERK SSTDRWEQVQ FSDGRERLWD GTKSSELASA 360 SDFSQLREDK GEQIASQEPS YTWASEQKWV HGLNNESKTQ WDQTVGIKAV QNNKNDTILS 420 KAEDAGGCIG TSDPRGHRKW PSDDMEMSPD WHYPVQPSNH VVKGDCNIVP DSGSKTSIAL 480 ATLSHAIVQE ALAKKQDIAI EPITADNTHF RQNHNLTKDV TSASAFNDKI TIDKTIASHA 540 EGNPSSNTVL GQRMAYHTDH PGGTVLNPKV SDGNFRVKQQ EDDGSVPGIN SGTTITPNIV 600 TSEQITQLTN LSVSLAQYFG NVQPLPQLYN SLNTQSVSET ASFPYSDAST GALGLPTKSG 660 PVVESSKQHD SALCNSLELK KFEVTKTPSD CLPNAAGQKS TTEVKDEVQM PNLPPSDPRD 720 KVDISAKETL HRSDAINHAK PAADGEATKE KNGDGDNENK TDPEDSQEND TTENANGNDG 780 AHDKKKGKDA KGIRAFKFAL VEFVKELLKP TWKEGHISKD VYKTIVKKVV DKVTGTLQGG 840 HIPQTQEKID HYLSFSKSKL TKLVQAYVDR VQKTT*

Sequence ? help Back to Top

Protein Sequence Length: 876 aa Download sequence Send to blast

MSGSSKKRTS KWDLREDSHV ETISGQEHGW PGKESRPGWI SPELAGDDGS KWSGMETTIG  60
ISKPKQDWGL LSKESLPGTR ASHKEDYTNK GYNKDMEGTA EWDADDKSYS TRMSPGLDEW  120
RRHRSSLSDR NDGSRSVRGR SRSRSWSRSR SRSRSPHSFK RDSGFHDRNR NRSRVSTQLC  180
REFVSGRCRR GNGCQFLHQD NQNMDDSWES RNRKGGRSLR STPHDFRDYP RSGRAAAQCT  240
DFVKGRCHRG ASCKYPHDSA FHELARGSPN DISRDRENDR SKEAYFSRGE REPGNSSLVI  300
CKFFAAGTCR NGKNCKFSHH SQSRASPERK SSTDRWEQVQ FSDGRERLWD GTKSSELASA  360
SDFSQLREDK GEQIASQEPS YTWASEQKWV HGLNNESKTQ WDQTVGIKAV QNNKNDTILS  420
KAEDAGGCIG TSDPRGHRKW PSDDMEMSPD WHYPVQPSNH VVKGDCNIVP DSGSKTSIAL  480
ATLSHAIVQE ALAKKQDIAI EPITADNTHF RQNHNLTKDV TSASAFNDKI TIDKTIASHA  540
EGNPSSNTVL GQRMAYHTDH PGGTVLNPKV SDGNFRVKQQ EDDGSVPGIN SGTTITPNIV  600
TSEQITQLTN LSVSLAQYFG NVQPLPQLYN SLNTQSVSET ASFPYSDAST GALGLPTKSG  660
PVVESSKQHD SALCNSLELK KFEVTKTPSD CLPNAAGQKS TTEVKDEVQM PNLPPSDPRD  720
KVDISAKETL HRSDAINHAK PAADGEATKE KNGDGDNENK TDPEDSQEND TTENANGNDG  780
AHDKKKGKDA KGIRAFKFAL VEFVKELLKP TWKEGHISKD VYKTIVKKVV DKVTGTLQGG  840
HIPQTQEKID HYLSFSKSKL TKLVQAYVDR VQKTT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008441033.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1
Refseq	XP_008441034.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1
Refseq	XP_008441035.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1
Refseq	XP_008441036.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1
Refseq	XP_008441038.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1
TrEMBL	A0A1S3B2H8	0.0	A0A1S3B2H8_CUCME; zinc finger CCCH domain-containing protein 38 isoform X1
STRING	XP_008441033.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4099	32	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-10	C3H family protein