PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002327P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 1581aa    MW: 177063 Da    PI: 8.6712
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002327P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.0007815471573123
                      EEET..TTTEEESSHHHHHHHHHH..T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                      y+C    Cg++F+  s++ rH r+  H
  MELO3C002327P1 1547 YVCAepGCGQTFRFVSDFSRHKRKtgH 1573
                      899999****************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005455.5E-172364IPR003349JmjN domain
PROSITE profilePS5118314.2842465IPR003349JmjN domain
PfamPF023751.2E-132558IPR003349JmjN domain
SMARTSM005587.8E-48196365IPR003347JmjC domain
PROSITE profilePS5118432.261199365IPR003347JmjC domain
SuperFamilySSF511973.57E-25210378No hitNo description
PfamPF023732.1E-36229348IPR003347JmjC domain
Gene3DG3DSA:3.30.160.602.6E-414561486IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551714641486IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.13614871516IPR007087Zinc finger, C2H2
SMARTSM003550.07214871511IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.9E-414881515IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014891511IPR007087Zinc finger, C2H2
SuperFamilySSF576671.64E-1314981552No hitNo description
Gene3DG3DSA:3.30.160.603.7E-815161541IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.74115171546IPR007087Zinc finger, C2H2
SMARTSM003550.001415171541IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028015191541IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-915421570IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.03215471578IPR007087Zinc finger, C2H2
SMARTSM003550.6215471573IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028015491573IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1581 aa     Download sequence    Send to blast
MAGTAMAAEP TQEVLSWLKT LPLAPEYHPT LAEFQDPISY IFKIEKEASK FGICKIVPPV  60
PPSPKKTVIV NFNKSLAARA APCSDSTNSK SPPTFTTRQQ QIGFCPRKTR PVQKSVWQSG  120
EYYTFQQFEA KAKNFEKSYL KKCTRKGGLS PLEIETLYWR ATLDKPFSVE YANDMPGSAF  180
VPVSAKMFRE AGEGTTLGET AWNMRGVSRA KGSLLKFMKE EIPGVTSPMV YVAMMFSWFA  240
WHVEDHDLHS LNYLHMGAGK TWYGVPRDAA VAFEEVVRVQ GYGGEINPLV TFAVLGEKTT  300
VMSPEVLVSA GVPCCRLVQN AGEFVVTFPR AYHTGFSHGF NCGEAANIAT PEWLNVAKDA  360
AIRRASINYP PMVSHYQLLY DLALSSRAPL CSGAEPRSSR LKDKRRSEGD TVIKELFVQN  420
IVENNSLLDN LGGGASVVLL PPGSLESIYS RLRVGSHLRS KPRFPTGVCS SKEETKSPQS  480
FDYDNLALEN SPGINRVKGF YSANGPYSTL SERSTDNLCA SSSRPLNANN ERGGNVQSNG  540
LSDQRLFSCV TCGILSFACV AIIQPREQAA RYLMSADCSF FNDWVVGSGI ASEGISTKDR  600
HPVSSQQISN SGKRDKCVSD GLYDIPVLAV NRQLQLAGKS YEADLNTEKR NETSALGMLA  660
LTYGHSSDSE DDNAEADAVL NVDDAKLMIC SSEEQYQFEN SGLTSSEYSK NTAILNHDPS  720
SFGVNSADHM QFQVNDYEEF RRADSKDSFN CSSESEMDGI GSTKKNGLST RYQDSHVNGR  780
SSLDADTEKP VFDKSTETVE TENMPFAPDI DEDSSRLHVF CLEHAKEVEQ QLRPIGGVHI  840
LLLCHPVSSD YYAKLENFAA SNIACFMKNL LDYPKMEAEA KLVAQELSMS HLWTDTIFRD  900
ATQDEEKRIQ LALDCEEAIP GNGDWAVKLG INLFYSANLS HSPLYSKQMP YNSVIYNAFG  960
RSTSANSSGK PKVYQRRTGK LKRVVAGKWC GKVWMSNQVH PLLAKRDPQE EDVDIFPSWT  1020
MSDEKVDRKS ANIQKIETVK VNRKSAGKRK MNYGRGTTKK AKLVESEDMV SDASVEDCIH  1080
RHHSILRNKQ CKFVESNDPM SDDSVEDDSS RKHGVPVSKG TPYFVTDDTG SDDSLGDRHT  1140
PHRGFSGFKL PRWGEIEPSV SDDSLEHYSS QHRGKNIKSR TEKYIERQDT LSDECLESGS  1200
LKQYRRIPKS KQTKVFKKNA ISHDIRDDSF LWHHQRPSRI KKAKFIESED AVSEHSLENN  1260
SHQHRSMPQI KPAKHTAWED AFSDGPDEDD NSLLHHRNVR SNMQFREITS DDQLDDSANQ  1320
CSRRVLRRKP VKTETISQMK QEILRPAKRG ASQTLKEEFA QSLKRGGRHS LKLETPQPKI  1380
QHATNRRGKQ TKRNGKSTDL ESEEDQLGGP STRLRKRTPK PTQLSEAKVK DKKPVAKKKM  1440
KTGSSLKTPA GHRDSKARDE ESEYLCDIEG CNMSFGTKQE LALHKRNICP VKGCVKKFFS  1500
HKYLVQHRRV HMDDRPLKCP WKGCKMTFKW AWARTEHIRV HTGARPYVCA EPGCGQTFRF  1560
VSDFSRHKRK TGHSTKKGRG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A1e-76153796346Transcription factor jumonji (Jmj) family protein
6ip4_A1e-76153796346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
114141440RKRTPKPTQLSEAKVKDKKPVAKKKMK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439230.10.0PREDICTED: lysine-specific demethylase REF6
TrEMBLA0A1S3AXW70.0A0A1S3AXW7_CUCME; lysine-specific demethylase REF6
STRINGXP_008439230.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56483250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6