PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000915501
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family DBB
Protein Properties Length: 303aa    MW: 33250.4 Da    PI: 7.0632
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000915501genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.54.9e-07445539
       zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                    C+ +++  ++ fC+ ++  lC+ C    H+        H++
  MDP0000915501  4 QCDVCNKDDASVFCTADEAALCDACDHRVHHAnklvskhHRF 45
                   7******99********************6554778886665 PP
2zf-B_box27.28.3e-095693439
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39
                   ++C+ ++e ++ lfC++++  lC++C l +H+   Ht+
  MDP0000915501 56 PVCDICQERRAFLFCQQDRAILCRECDLPIHNAneHTR 93
                   79*****************************6688876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.623147IPR000315B-box-type zinc finger
CDDcd000211.03E-6347No hitNo description
SMARTSM003366.1E-4447IPR000315B-box-type zinc finger
SMARTSM003361.6E-1453100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.18253100IPR000315B-box-type zinc finger
PfamPF006434.7E-75693IPR000315B-box-type zinc finger
CDDcd000216.86E-115697No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MKIQCDVCNK DDASVFCTAD EAALCDACDH RVHHANKLVS KHHRFSLVHP SSKEFPVCDI  60
CQERRAFLFC QQDRAILCRE CDLPIHNANE HTRKHNRYLL TGIKLSATSA LYKSSPPRPT  120
VATASSETAS TDLKKHQPST KKSVSAASPA ISNPNPPPIS VKNSTSTAAI DKGGGNLVGA  180
TSTISEYLIE TLPGWHVEDF LDFSNTPFGF SKVDNDMMLS FSETYPESNL NSFSSENMGM  240
WVPQASQAPP YQYSQMGGGF VGFEETKEGT NMKASNRMWM DDGFTVPQIS PPSVGSKRFR  300
PF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.235530.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008387988.10.0B-box zinc finger protein 21
SwissprotQ9LQZ74e-89BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A498HR970.0A0A498HR97_MALDO; Uncharacterized protein
STRINGXP_008387988.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.11e-86salt tolerance homolog2
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]