PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000876858 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 82aa MW: 9360.94 Da PI: 10.707 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.3 | 5.3e-15 | 20 | 66 | 2 | 52 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 +ykGV + +grWv+eIr p+ + +++lg+++ +++Aa+a++aa + MDP0000876858 20 HYKGVQMRA-WGRWVSEIRLPK----SgIKIWLGTYDAPDQAARAYDAAVYS 66 69***9887.**********94....35********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.91E-18 | 20 | 63 | No hit | No description |
SuperFamily | SSF54171 | 4.71E-15 | 20 | 66 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.7E-14 | 20 | 77 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-8 | 20 | 64 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-21 | 20 | 67 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.832 | 20 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-8 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-8 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
MDMGRTSTLK KVWRQRAPGH YKGVQMRAWG RWVSEIRLPK SGIKIWLGTY DAPDQAARAY 60 DAAVYSLPLS PFLRKDICFV F* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009376369.1 | 2e-33 | PREDICTED: ethylene-responsive transcription factor ERF015 | ||||
Swissprot | Q6NLD5 | 4e-19 | ERF15_ARATH; Ethylene-responsive transcription factor ERF015 | ||||
TrEMBL | A0A498JYN6 | 1e-51 | A0A498JYN6_MALDO; Uncharacterized protein | ||||
STRING | XP_009376369.1 | 9e-33 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15479 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77200.1 | 2e-11 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000876858 |
Publications ? help Back to Top | |||
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