PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000872821 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 187aa MW: 21216.2 Da PI: 9.6437 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++++G g+W++ ++ g+ R++k+c++rw +yl MDP0000872821 13 KGAWSKQEDQKLIDYIQKHGEGCWNSLPHAAGLSRCGKSCRLRWINYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48 | 2.8e-15 | 71 | 110 | 6 | 47 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ MDP0000872821 71 EDEEDLIIRLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNTH 110 89***************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 4 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.935 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.24E-28 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-14 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-16 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.56E-11 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 24.138 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-24 | 63 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-14 | 65 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.94E-11 | 71 | 111 | No hit | No description |
Pfam | PF00249 | 8.0E-14 | 71 | 110 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MRKPCYEKYE INKGAWSKQE DQKLIDYIQK HGEGCWNSLP HAAGLSRCGK SCRLRWINYL 60 RPDLKRESIR EDEEDLIIRL HALLGNRWSL IAGRLPGRTD NEVKNYWNTH IRKKLLKMGS 120 TLDPKKPHHH NDPHLRKGTT ATVPLLQPDT SSPISFALSS SDSMSTGAEI HSNKSGLPDL 180 NLDLSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-30 | 10 | 115 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.29604 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008374825.1 | 1e-136 | transcription repressor MYB6-like | ||||
Refseq | XP_028959941.1 | 1e-136 | transcription repressor MYB6-like | ||||
Swissprot | P81393 | 3e-66 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A498JL09 | 1e-122 | A0A498JL09_MALDO; Uncharacterized protein | ||||
STRING | XP_008374825.1 | 1e-135 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 2e-66 | myb domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000872821 |
Publications ? help Back to Top | |||
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