PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000846736 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | FAR1 | ||||||||
Protein Properties | Length: 220aa MW: 25092.3 Da PI: 6.5809 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.4 | 8.9e-27 | 77 | 167 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y+++ GF+vr++++++s+ n++i+ ++fvCskeg+r+++ +++++ + ++tr gC+a++++ +++ kw+vtk+++eHnH+l+ MDP0000846736 77 EFYVAYGRRSGFTVRIHHNRRSRVNNQIIGQDFVCSKEGFRAKKYVHRKDR-VlpPPPVTREGCQAMIRLALRDGPKWVVTKFVKEHNHKLM 167 6******************************************99883332.245899********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.3E-24 | 77 | 167 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MDHESNHGFD SDESDLDVHA ETYEHNEGIQ GVLPENLDLC VDEKEETEEQ SADLPMNVEA 60 LEPYIGMEFN SRDEAREFYV AYGRRSGFTV RIHHNRRSRV NNQIIGQDFV CSKEGFRAKK 120 YVHRKDRVLP PPPVTREGCQ AMIRLALRDG PKWVVTKFVK EHNHKLMSPS KVPWRGSGKH 180 LASESCAYCY QALVQAWNHL ALAVKLKLNI PCSLYEAVV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008369148.1 | 1e-137 | protein FAR1-RELATED SEQUENCE 6-like | ||||
TrEMBL | M5XFI8 | 1e-122 | M5XFI8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008369148.1 | 1e-137 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8861 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 3e-27 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000846736 |