PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000829998
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 388aa    MW: 43169.8 Da    PI: 6.8398
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000829998genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.8e-14159210155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++++k+L+
  MDP0000829998 159 QRMTHIAVERNRRRQMNDHLNVLRSLMPTS---YIQRGDQASIVGGAIDFVKELE 210
                    79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.64E-13157214No hitNo description
PROSITE profilePS5088815.777158209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-16158223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-11159210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-14159222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-11164215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MPSLEDRMPF LQMLQSVNSS TTTTTPYFPL KEPSFQTLLK LQHFKKPWEL DKTYMPEMET  60
TIQRAPELES CVTHEMVELQ HSPVKSEGKN FHLQHSISEC NQGEEKPSSA AGSPPPPTWV  120
QVHNGAEETQ QPKSPPATRE RRKRKRTXPT KNKEEVESQR MTHIAVERNR RRQMNDHLNV  180
LRSLMPTSYI QRGDQASIVG GAIDFVKELE QLLHSLEAQK GNRKTADQIQ GMNNNGNNNS  240
SFSSSPASSS SPCSMAMPSN GMFMTLSQCR IGSHDQEGTT AIXTAATAFE DEGTAQXKSE  300
AADIDVTVIQ SHVNLKVQCQ RRAGQLMKAI LAFEDLRLTV LHLNITSSQD TVLYSFNLKI  360
EEGCNLGSAD DIARAVHQIF SFINGSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140145RRKRKR
2159170RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.166783e-68fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008376236.20.0LOW QUALITY PROTEIN: transcription factor bHLH57-like
TrEMBLA0A498JH170.0A0A498JH17_MALDO; Uncharacterized protein
STRINGXP_008376236.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-71bHLH family protein