PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000825447
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 283aa    MW: 31346.8 Da    PI: 4.2841
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000825447genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.3e-0722452448
                     HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48
                     W+tIa+ ++ gRt++++k+ w+++l
    MDP0000825447 22 WATIASQLP-GRTDNEIKNLWNTHL 45
                     *********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.83E-72054IPR009057Homeodomain-like
PROSITE profilePS500906.2142245IPR017877Myb-like domain
CDDcd001671.43E-42245No hitNo description
Gene3DG3DSA:1.10.10.603.5E-112262IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MNTVDLSFTD DWPGFDKLMH WWATIASQLP GRTDNEIKNL WNTHLRKGLV SMGIDPQTHE  60
PLSSNCLSNX ASASAATRHM AQWESARLEA EARLSRDSSL FSRVPEKSES DHFLRLWNSE  120
VGKSFRKLST SDKFACQSPI SQASSSTKCG SLSAVTTEVG NLTGSSTMAG NXNEDLIYRP  180
FLINTEDVEY KPFQFNTEEV GYKPFQSXTE EVEFKICQSN TEDVMAGSVS SCSNDLEDSS  240
DTALQLLLDY PTNDDMSFLE NNANDYATTP AELTPNSFIC PL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.159950.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0744650.0DQ074465.1 Malus x domestica MYB14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315746.10.0myb-related protein Myb4-like
TrEMBLQ2LME70.0Q2LME7_MALDO; MYB14
STRINGXP_008339263.10.0(Malus domestica)
STRINGXP_008353981.10.0(Malus domestica)
STRINGXP_008362620.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-54myb domain protein 17