PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000786741 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | FAR1 | ||||||||
Protein Properties | Length: 732aa MW: 83637 Da PI: 6.6761 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.6 | 1.3e-20 | 53 | 146 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w+vt +++ HnHel MDP0000786741 53 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQMKPSEDGKMQRNRKSSRCGCQAYMRIVKRAdfdVPEWRVTGFSNIHNHELL 146 6***************9998874556679*******************9*******************98887676789*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-17 | 53 | 146 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.1E-23 | 269 | 361 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.681 | 533 | 581 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.0E-6 | 555 | 579 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.9E-5 | 556 | 583 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MSEGTSLGME DLSQDDIGTI EETAEDTILS RQTSVNLVPF VGQRFVSQEA AYEFYCSFAK 60 QCGFSIRRHR TRGKDGVGRG VTRRDFTCHR GGYPQMKPSE DGKMQRNRKS SRCGCQAYMR 120 IVKRADFDVP EWRVTGFSNI HNHELLKSNE VRLLPAYCSM STDDKSRICM FAKAGMSVRQ 180 MLRLMEMEKG VKLGCLPFTE IDVRNLLQSF RNVNRDTDAI DLIAMCKKMK DESPNFKYEF 240 KIDGHNRLEH IAWSYSSSVQ LYEEFGDSVV FDTTHXLDAY DMLLGIWLGV DNHGMTCFFG 300 CALLRDENMQ SFSWALKTFL GFMKGKAPQT MLTDHNMWLK EAVAIEMPRS KHAFCIWHIV 360 AKFSDWFSVL LGPRYDDWKA EFHQLFNLDL VEDFEDRWRE MVNEYGLQAN KHVISLYALR 420 NFWALAYLRN YFFAGIMSTS QSESINAFIQ RFLSAQSQLD RFVEQAADVV DYNDRVGVKQ 480 KIERKLQRVC LKTGSPIESH AASVLTPYAF GKLQEELVSA PQYASLAVDE GCFQVRHHTE 540 ADGGCKVVWI PCQEHISCTC YQFEFSGILC RHVLRVLSTN NCFHIPDQYL PTRWCSVSSS 600 STNTFETATI ADNSEKIQLL ESMASTLITE SVETEERLDA ACEQIAMVLS RIKDLPRTTH 660 NAIDIAYNCP SDSLILPDVE DHGDGIIRFR IGNSHESVTL GKLKERRPRD MVEISKKRRH 720 CSGPCCLSVQ Q* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009347773.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 11-like | ||||
Refseq | XP_009347774.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 11-like | ||||
Swissprot | Q9SY66 | 0.0 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | A0A251QWJ8 | 0.0 | A0A251QWJ8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008390558.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF594 | 30 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 0.0 | FAR1-related sequence 11 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000786741 |
Publications ? help Back to Top | |||
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