PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000784297 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 239aa MW: 25873.5 Da PI: 9.288 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.5e-18 | 34 | 79 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v+++G+++W++I+r++ gR++k+c++rw + MDP0000784297 34 KGPWSAEEDRVLTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 79 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 49.9 | 7.1e-16 | 88 | 130 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a +++G++ W+tIar ++ gRt++ +k++w++ MDP0000784297 88 SFSQAEDETILAAQARFGNR-WATIARLLP-GRTDNAVKNHWNST 130 699*****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.034 | 29 | 84 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.52E-30 | 31 | 127 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-16 | 33 | 82 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-17 | 34 | 79 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-24 | 35 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.54E-14 | 36 | 78 | No hit | No description |
PROSITE profile | PS51294 | 19.583 | 85 | 135 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-13 | 85 | 133 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.16E-10 | 88 | 131 | No hit | No description |
Pfam | PF00249 | 9.9E-13 | 88 | 130 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-21 | 88 | 134 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence Send to blast |
MEALXICSSS ASSSDTSSSE SSLTRNPNKP ERIKGPWSAE EDRVLTRLVE RYGPRNWSLI 60 SRYIKGRSGK SCRLRWCNQL SPSVQHRSFS QAEDETILAA QARFGNRWAT IARLLPGRTD 120 NAVKNHWNST LKRRVRGDQL TEGGSFLGGG GNVGSNEGMS TNSVSGSLVN GSMEFDPLTE 180 LTLAPPGIGS GSGGAMVAEQ RRNNESVPAG FWDAMRDVIA REVRDYVATT FSEPSGLL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 4e-44 | 30 | 135 | 54 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-44 | 30 | 135 | 54 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.16572 | 0.0 | cell culture| stem |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008352004.2 | 1e-173 | transcription factor MYB73-like | ||||
Swissprot | O23160 | 7e-58 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A498HR11 | 1e-171 | A0A498HR11_MALDO; Uncharacterized protein | ||||
STRING | XP_008352004.1 | 1e-172 | (Malus domestica) | ||||
STRING | XP_008361013.1 | 1e-172 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5074 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37260.1 | 4e-58 | myb domain protein 73 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000784297 |
Publications ? help Back to Top | |||
---|---|---|---|
|