PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000686132 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | Trihelix | ||||||||
Protein Properties | Length: 441aa MW: 50179.3 Da PI: 6.6165 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 67.9 | 2.1e-21 | 113 | 209 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt++ v++Li+++ ++++ + + +kk++W+ vs+ m ++g+++sp+qC++k+++lnkryk+++++ +++ t++++++ ++ d MDP0000686132 113 KWTDNVVRLLIDVVACVGDDGSVEGgeglkrksrilQKKGKWKTVSQIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtTCRVVENPALMDA 208 7**************777777743223555666788**********************************************77999999998888 PP trihelix 85 l 85 + MDP0000686132 209 M 209 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.5E-18 | 111 | 236 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MDSSGLGGGF LSGPSGGILD LELPVPRLLG HHQHNMNVMG GGGIAGDRHP IGLVEVKESV 60 PKVGSTIAKG KAVASFNGNN GYNLSDDDEQ NYTDDESIEG AKGKKGSRWQ RMKWTDNVVR 120 LLIDVVACVG DDGSVEGGEG LKRKSRILQK KGKWKTVSQI MISKGCHVSP QQCEDKFNDL 180 NKRYKRLNDI LGRGTTCRVV ENPALMDAMP HLSAKAMDDV RKILSSKHLF YKEMCAYHNG 240 QRISDCQDLN PHGYSLPLGR CSKDINGSEE EEAEENHDSE DDKLDNEDHN DADNDRERMR 300 RMSERKKARE EDGHLWPQHV PLDSFEVEVG DCFQDTTKSL WERRDWIKKQ KLQLEEQRVS 360 FHAEALEIEK QRYKWLRYCS KKDRELERLR LENERMKLEN ERRVLQLRQK EVELDLRRSE 420 ASLEPSSLGL GRDHIDLGRH * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 295 | 306 | RERMRRMSERKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008359235.1 | 0.0 | myb/SANT-like DNA-binding domain-containing protein 4 | ||||
TrEMBL | A0A498IKR0 | 0.0 | A0A498IKR0_MALDO; Uncharacterized protein | ||||
STRING | XP_008359235.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10546 | 32 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 7e-60 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | MDP0000686132 |