PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000686132
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 441aa    MW: 50179.3 Da    PI: 6.6165
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000686132genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.92.1e-21113209185
       trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 
                    +Wt++ v++Li+++  ++++ + +            +kk++W+ vs+ m ++g+++sp+qC++k+++lnkryk+++++ +++ t++++++ ++ d 
  MDP0000686132 113 KWTDNVVRLLIDVVACVGDDGSVEGgeglkrksrilQKKGKWKTVSQIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtTCRVVENPALMDA 208
                    7**************777777743223555666788**********************************************77999999998888 PP

       trihelix  85 l 85 
                    +
  MDP0000686132 209 M 209
                    7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-18111236No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MDSSGLGGGF LSGPSGGILD LELPVPRLLG HHQHNMNVMG GGGIAGDRHP IGLVEVKESV  60
PKVGSTIAKG KAVASFNGNN GYNLSDDDEQ NYTDDESIEG AKGKKGSRWQ RMKWTDNVVR  120
LLIDVVACVG DDGSVEGGEG LKRKSRILQK KGKWKTVSQI MISKGCHVSP QQCEDKFNDL  180
NKRYKRLNDI LGRGTTCRVV ENPALMDAMP HLSAKAMDDV RKILSSKHLF YKEMCAYHNG  240
QRISDCQDLN PHGYSLPLGR CSKDINGSEE EEAEENHDSE DDKLDNEDHN DADNDRERMR  300
RMSERKKARE EDGHLWPQHV PLDSFEVEVG DCFQDTTKSL WERRDWIKKQ KLQLEEQRVS  360
FHAEALEIEK QRYKWLRYCS KKDRELERLR LENERMKLEN ERRVLQLRQK EVELDLRRSE  420
ASLEPSSLGL GRDHIDLGRH *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295306RERMRRMSERKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008359235.10.0myb/SANT-like DNA-binding domain-containing protein 4
TrEMBLA0A498IKR00.0A0A498IKR0_MALDO; Uncharacterized protein
STRINGXP_008359235.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.17e-60sequence-specific DNA binding transcription factors