PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000652631 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 232aa MW: 25430.4 Da PI: 10.2837 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.8 | 9.6e-14 | 40 | 92 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++++h e+E++RR+++ + + Lr++lP + ++K s a+ +Av+YIk+Lq MDP0000652631 40 KKMMHREIEKKRRQEMANLYGSLRSVLPLEF--IKGKRSLADHMNEAVNYIKHLQ 92 6899*************************65..*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.09E-14 | 36 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.74E-11 | 37 | 96 | No hit | No description |
PROSITE profile | PS50888 | 13.897 | 39 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-10 | 40 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-10 | 41 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.7E-4 | 45 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MDVGMFNNLN TGGQRRKSSL APTSDGAKNQ DKPNDDDEKK KMMHREIEKK RRQEMANLYG 60 SLRSVLPLEF IKGKRSLADH MNEAVNYIKH LQKRIKIFGA KRDELKMGSS SNLSARNLDH 120 GSIGSLSTST STLVAVHPCL AGVEIVVSTD GSAKQFFLLS RMLKILLGQG LSVISCATAQ 180 VNKRLVYTIQ SELDDLMNNC RLSRRCARHA LGAVVGHVAE LCCPGRSTFV A* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008376746.1 | 1e-107 | transcription factor bHLH120-like isoform X1 | ||||
Swissprot | Q9FLI0 | 2e-44 | BH120_ARATH; Transcription factor bHLH120 | ||||
TrEMBL | A0A498JIS7 | 1e-138 | A0A498JIS7_MALDO; Uncharacterized protein | ||||
STRING | XP_008376998.1 | 1e-135 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 3e-46 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000652631 |
Publications ? help Back to Top | |||
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