PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000618200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family FAR1
Protein Properties Length: 234aa    MW: 26415.9 Da    PI: 8.7603
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000618200genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR191.51.1e-2869156291
           FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                    fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++  k  r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p
  MDP0000618200  69 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGYRMPDKRE--KVVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLTP 156
                    ******************************************9988..999************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-2669156IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MELSRAGDEN ETGGSSVEGA FQLGLDDKIN LDSPRGDIIP EAVPVVSVVP ADEPYVGQEF  60
ETEAAAHAFY NAYATRVGFI IRVSKLSRSR RDGSAIGRAL VCNKEGYRMP DKREKVVRQR  120
AETRVGCRAM ILVRKVSSGK WVVTKFVKEH THPLTPGKGR RDCIYDQYPN EHDKIRELSQ  180
QLAIEKKRAA TYKRHLDLIF EHIEEHNESL SKKIQHIVES VKEIEGKEQQ GYR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.236792e-65fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028947477.11e-173protein FAR1-RELATED SEQUENCE 5-like
SwissprotQ9SZL86e-26FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A498I9G21e-171A0A498I9G2_MALDO; Uncharacterized protein (Fragment)
STRINGXP_004309808.11e-159(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24533072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.25e-95FAR1 family protein
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]