PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000563165 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | NAC | ||||||||
Protein Properties | Length: 466aa MW: 52845.5 Da PI: 6.1684 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.7 | 3.8e-52 | 16 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +ppGfrFhPt+eel+++yLkkkv++++++l +vi++vd++k+ePwd+++k+k +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk ++ MDP0000563165 16 VPPGFRFHPTEEELLQYYLKKKVSNQRIDL-DVIRDVDLNKLEPWDIQEKCKIgttPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIC 110 69****************************.9***************964444222455************************************9 PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s + + +g++ktLvfykgrap+g+k+dW+mheyrl MDP0000563165 111 S-NCRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 144 9.8889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.06E-58 | 10 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.254 | 16 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-28 | 17 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MAPENMSISV NGQSQVPPGF RFHPTEEELL QYYLKKKVSN QRIDLDVIRD VDLNKLEPWD 60 IQEKCKIGTT PQNDWYFFSH KDKKYPTGTR TNRATAAGFW KATGRDKVIC SNCRRIGMRK 120 TLVFYKGRAP HGQKSDWIMH EYRLDDNNTS NCNITNVSTV MGEAAQDEGW VVCRIFKKKN 180 LHKSLSSPIL STTTSSITTE TRSGQSLFDS CPEGTLEQIL QYMERTCKEE ENEAYINNIS 240 TRFNLQPINT GISNTTNHNG FHERFLKLPT LDSPNSTSSQ DCYQPNIHEE MMVTEKNNDQ 300 VSPFTDNHQN MDYNAHHMDS GLTSWEALDH LVASQLNGQT EASRQLACFS SDPHNTIVYD 360 NDDHDHELQL PSTLRGSLSS SNKSYHPTHH YNNSEFDLWN FDRRSASLSS SDTLCHSQLG 420 GWDDGTMGEM NPPTNCEDGT MGEMNPPKNM IRAELSITKP KIHAG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-50 | 16 | 180 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in various aboveground tissues undergoing thickening of the lignified secondary wall such as anthers, filaments of stamens, the base of carpels, styles, the boundaries between siliques and pedicels, the midrib of leaf veins, and inflorescence stems, specifically in interfascicular fibers (sclerenchyma), cells differentiating into vascular vessels, and xylary fibers (secondary xylem). {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ919963 | 0.0 | KJ919963.1 Eriobotrya japonica NAC2 transcription factor (NAC2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008347184.1 | 0.0 | NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 1e-135 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A498JBS9 | 0.0 | A0A498JBS9_MALDO; Uncharacterized protein | ||||
STRING | XP_008347184.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3031 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-121 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000563165 |