PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000552725
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 288aa    MW: 32691.9 Da    PI: 6.3735
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000552725genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.12e-131459146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+WT+eEde l+  vk+ G+++W++I ++  + Rt+k+c++rw +
    MDP0000552725 14 KGPWTAEEDEVLISHVKRNGPRDWSSIRSKGLLPRTGKSCRLRWVN 59
                     79*************************8876677**********87 PP
2Myb_DNA-binding41.62.9e-1370109344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      +++ eE+   +++ +q+G++ W++Ia +++ gRt++++k++w
    MDP0000552725  70 KFSXEEERMVIQLQAQFGNK-WAKIAXYLQ-GRTDNDVKNFW 109
                      79******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.154965IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-191062IPR009057Homeodomain-like
SuperFamilySSF466891.46E-2712109IPR009057Homeodomain-like
SMARTSM007175.5E-111363IPR001005SANT/Myb domain
PfamPF002491.4E-111459IPR001005SANT/Myb domain
CDDcd001678.65E-121661No hitNo description
Gene3DG3DSA:1.10.10.601.5E-1663114IPR009057Homeodomain-like
PROSITE profilePS5129417.26266117IPR017930Myb domain
SMARTSM007174.4E-1167115IPR001005SANT/Myb domain
PfamPF002497.3E-1270109IPR001005SANT/Myb domain
CDDcd001672.37E-1070109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MARQKQNDGA YIRKGPWTAE EDEVLISHVK RNGPRDWSSI RSKGLLPRTG KSCRLRWVNK  60
LXPNLKTGCK FSXEEERMVI QLQAQFGNKW AKIAXYLQGR TDNDVKNFWS ARRKRFERIL  120
QKSTSSNSXK NKGKSLVHHE FPVDKVSSHP SNXFLNSXEL GMVDLPDLVK ANQLLNVEAE  180
QQPMXEAXPI NMIXSSDFPP HLSLSQLPQP QLDLSFLSGC KEIDXDPIVL NLLDXFGQDI  240
PPLGLEENXQ GXKLGELKDL STPDIFFDEF PPEMLDYLET LTSSSEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-261411527126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028962383.10.0transcription factor DUO1-like
TrEMBLA0A498KKD40.0A0A498KKD4_MALDO; Uncharacterized protein
STRINGXP_008391800.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36933164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.19e-62MYB family protein