PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000551876 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | DBB | ||||||||
Protein Properties | Length: 445aa MW: 49107.4 Da PI: 6.7382 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.9 | 7.6e-07 | 4 | 46 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 C+ +++ ++ fC+ ++ lC+ C H+ H+++ MDP0000551876 4 QCDVCNKDDASVFCTADEAALCDACDHRVHHAnklaskhHRFS 46 7******99********************64458888877665 PP | |||||||
2 | zf-B_box | 28.7 | 2.6e-09 | 56 | 93 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39 ++C+ ++e ++ lfC++++ lC++C l++H+ Ht+ MDP0000551876 56 PVCDICQERRAFLFCQQDRAILCRECDLSIHNAneHTL 93 79*****************************7689987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.594 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.45E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 2.1E-4 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.2E-14 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.509 | 53 | 100 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.42E-11 | 56 | 100 | No hit | No description |
Pfam | PF00643 | 1.9E-7 | 56 | 94 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MKIQCDVCNK DDASVFCTAD EAALCDACDH RVHHANKLAS KHHRFSLIHP SSKEFPVCDI 60 CQERRAFLFC QQDRAILCRE CDLSIHNANE HTLKHNRFLL TGIKLSATSA LYESPPPPTV 120 ATASSETAAT DLKKHQPLTK ESVSXXSPPI SNPXPPPVAA XNSTSXAAXN KGGGNLVGAT 180 SSISEYLIET LPGWHVEDFL DFSSAPFGFS KADNDMMLPF SDAYPGSNLN SFSSENMGMW 240 VPQAPQAPPH QYSQVGGGFV GFKETKEGTN MNAGKRLWMD DGFTVPQISP PSLGSKREIP 300 IILERPSMAT SGTKIDVKEG LLTMTVFEET MEFKNFYAMK QPGKIPKLFK LTRSSNALET 360 CLTQNCDEYE LESELYEMQA ALNALPAIVK VNSVQQVPGN HVRGRQLFEE LPLTFRNLVP 420 SVKKPLKLER KQLPQHLKYA YFGE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.12121 | 0.0 | bud| fruit| leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU024826 | 3e-53 | EU024826.1 Fragaria vesca subsp. americana clone fosmid 08G19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001315700.1 | 0.0 | B-box zinc finger protein 21-like | ||||
Swissprot | Q9LQZ7 | 1e-88 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A498JBG9 | 0.0 | A0A498JBG9_MALDO; Uncharacterized protein | ||||
STRING | XP_008347357.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 3e-84 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000551876 |