PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000535412 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 473aa MW: 50211.9 Da PI: 8.3525 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.9 | 6e-12 | 48 | 73 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++++rtG+C yG+rC+++H++ MDP0000535412 48 DEADCSYYLRTGICGYGSRCRYNHPR 73 6799********************96 PP | |||||||
2 | zf-CCCH | 42 | 1.6e-13 | 96 | 119 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtGtCk+G++CkF+H++ MDP0000535412 96 PVCQYYMRTGTCKFGASCKFHHPK 119 79********************96 PP | |||||||
3 | zf-CCCH | 33 | 1e-10 | 139 | 165 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ +tG+Ck+ ++CkF+H++ MDP0000535412 139 PGERECSYYVKTGQCKFSATCKFHHPQ 165 5789*********************97 PP | |||||||
4 | zf-CCCH | 38.9 | 1.4e-12 | 300 | 326 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H+p MDP0000535412 300 PGQPECQYYMRTGDCKFGSSCRYHHPP 326 5789*********************97 PP | |||||||
5 | zf-CCCH | 34.8 | 2.7e-11 | 348 | 371 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +lC ++++ G Ck+G+ CkF H+ MDP0000535412 348 APLCTHYQQRGACKFGPACKFDHP 371 68*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.033 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-5 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-9 | 48 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 49 | 75 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-5 | 52 | 73 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.126 | 92 | 120 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-7 | 93 | 119 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 94 | 119 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.2E-11 | 96 | 119 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.7E-6 | 97 | 118 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 138 | 166 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 138 | 165 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-8 | 140 | 165 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-5 | 141 | 166 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.37 | 299 | 327 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-6 | 299 | 326 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.5E-10 | 301 | 326 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-6 | 303 | 328 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-5 | 305 | 327 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.413 | 345 | 373 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-6 | 345 | 372 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.2E-9 | 348 | 371 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 349 | 375 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-5 | 350 | 370 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MERYGRAAEG SQSDPPPEWN IPGPETGLEE SMWQLGLRPG ESYPERPDEA DCSYYLRTGI 60 CGYGSRCRYN HPRDRSTVTV AARPGGLEYP ERASQPVCQY YMRTGTCKFG ASCKFHHPKQ 120 GGSSGSPVSL NYYGYPLRPG ERECSYYVKT GQCKFSATCK FHHPQPAGIQ LPVPSPAPRV 180 SPVPATHTLY QTVQSPSVSS QQYEVVFARP PLLQGSYVPS PYGQVLLSPG TIPFPGWNPY 240 QAPASQLPSS TQPGVGSGTL YTQLSPSAPA YTGVYQPIPL PSSFGLPTTS QKELSFPERP 300 GQPECQYYMR TGDCKFGSSC RYHHPPEAVQ PKATVVLSSS GLPSRPGAPL CTHYQQRGAC 360 KFGPACKFDH PIGTLSYSSS TSSLADMPVA PYPVGSSIGT LAPSSSSSEL RPELSSSSGK 420 ELVSARMSSS LSTSSGSVGS TVSKGGVTPV GVQQSSQGSG PSVGSGNNTE SQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.11148 | 0.0 | bud| fruit| leaf| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008340827.2 | 0.0 | zinc finger CCCH domain-containing protein 58 | ||||
Swissprot | Q6NPN3 | 1e-158 | C3H58_ARATH; Zinc finger CCCH domain-containing protein 58 | ||||
TrEMBL | A0A498I9Z3 | 0.0 | A0A498I9Z3_MALDO; Uncharacterized protein | ||||
STRING | XP_009352233.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06410.1 | 1e-141 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000535412 |
Publications ? help Back to Top | |||
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