PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000494181
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 345aa    MW: 37924.2 Da    PI: 7.8711
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000494181genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.5e-1148118154
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...................TTS-STCHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPk.as................kapskKlsKaeiLekAveYIksL 54 
                    r++ +  rE+ RRdr+N+ f+eL   l + a                  ++ +K++Ka+iL+ +++ +k+L
  MDP0000494181  48 RKVQKADREKLRRDRLNEHFFELGNTLVHgARalilnkhgrpcyvgnaDPDRPKNDKATILTDTIQMLKDL 118
                    5677889**********************888***************8788888***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.92247118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-1148141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-1048146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-848118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.98E-748122No hitNo description
SMARTSM003532.9E-653124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDHWKSDDFS AASAPSSTQP LPCGRPHNSN SDSRQRLDVE TKDPIVARKV QKADREKLRR  60
DRLNEHFFEL GNTLVHGARA LILNKHGRPC YVGNADPDRP KNDKATILTD TIQMLKDLTT  120
DVNKLKAECS ALTDESRELT QEKNELREEK ASLKSDIENL NVQYQQRLRV MFPWAGMDPS  180
VVMAPPYSYP MPVAVPSGPI PMHPSLQSYP YFQAQNPAAM PNPCSTFVPY PAPANPPVQQ  240
PSPLYASISH LSSKQDSRSR SSDHQGGSTA ERCDDSNDVA TDLELKMPGS STPQDSSSAV  300
KKAKQSQRKD RSVTDGCSSS RHSTSQVVQD SSSNSVGDVP KPNK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.148020.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028946410.10.0transcription factor bHLH121-like isoform X1
SwissprotQ9LT237e-81BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A498KGZ80.0A0A498KGZ8_MALDO; Uncharacterized protein
STRINGXP_008336910.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.15e-79bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]