PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000463846 | ||||||||
Common Name | MYB5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 320aa MW: 34631.1 Da PI: 8.6448 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.1 | 4.8e-19 | 12 | 57 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++vk +G+++W++I++ ++ gR++k+c++rw + MDP0000463846 12 KGPWSPEEDEALQNLVKNYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.5e-17 | 66 | 108 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++eEd+ +++a++++G++ W+tIar ++ gRt++ +k++w++ MDP0000463846 66 PFSPEEDDTIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 108 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.855 | 7 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-32 | 9 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-16 | 11 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-18 | 12 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-26 | 13 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.55E-16 | 14 | 56 | No hit | No description |
SMART | SM00717 | 7.7E-15 | 63 | 111 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.828 | 64 | 113 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 66 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.19E-12 | 66 | 109 | No hit | No description |
Pfam | PF00249 | 3.9E-15 | 66 | 108 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MASTKKVVDR IKGPWSPEED EALQNLVKNY GPRNWSLISK SIPGRSGKSC RLRWCNQLSP 60 EVEHRPFSPE EDDTIIRAHA RFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKSSSMSEDL 120 SSDVQAHPPH KRSASVGAVP VTGLYFNPGS PSGSDLSDSS LPGGVSPSSQ VFTPFARPLP 180 PPIALPPMEA VTSAMAVDPP TSLSLSLPGS ESCDGSSHMA SGFGTNSIVG PAQIVQQAPE 240 VTAPPRAVGL PPAPRQSNQN SETGHDQQFF SSEFLDMMQE MIRKEVRNYM TGIEQKGLCM 300 HTEAIRNAVV KRIGISRIE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-40 | 11 | 112 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-40 | 11 | 112 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.12645 | 0.0 | bud| fruit| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB627312 | 0.0 | AB627312.1 Malus x domestica mRNA, microsatellite: MEST188, clone: SAM01_20_H07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001287808.1 | 0.0 | transcription factor MYB44-like | ||||
Swissprot | O23160 | 3e-89 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | D9ZJ66 | 0.0 | D9ZJ66_MALDO; MYB domain class transcription factor | ||||
STRING | XP_008377995.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF843 | 34 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 1e-70 | myb domain protein r1 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000463846 |
Entrez Gene | 103441079 |
Publications ? help Back to Top | |||
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