PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000441454
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 571aa    MW: 62190 Da    PI: 9.2377
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000441454genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-054668123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   + C+ C+k F r  nL+ H r H
  MDP0000441454 46 FICEVCNKGFQREQNLQLHRRGH 68
                   89*******************88 PP
2zf-C2H212.50.00043122144123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k++  +s+ k H +t+
  MDP0000441454 122 WKCDKCSKRYAVQSDWKAHSKTC 144
                    58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.83E-84568No hitNo description
Gene3DG3DSA:3.30.160.606.3E-64568IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121712.8E-54668IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00524668IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.994668IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
SMARTSM0035528087117IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-5110143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.83E-8117142No hitNo description
SMARTSM00355140122142IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MLPPQXQAQP HHLKRKGEIN QEIQATDPDA EVIALSPKTL MATNRFICEV CNKGFQREQN  60
LQLHRRGHNL PWKLKQKTNK EPRRKVYLCP EPSCVHHDPS RALGDLTGXK KHYSRKHGEK  120
KWKCDKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAQESARH  180
PSSLSTMGGS LYGNNHMSLG PSQIPSLQNS THLPNNXLRL GSSGSAKFEH LIPPSNPSSF  240
GSQAMPNSPN FFMRDIANQQ GFQDQHQFPN KVLHGLMQLP DLQSNPNNNS SSPSSNSAAN  300
LFNLSFFSNN GTSRSITPTD HQFSDGNGGG QGFSMSHDHQ IGSGSLPSLY GNSMQHEGGM  360
APHMSATALL QKAAQMGSTT STESSSLLRG LGNSSTRAAK SGRQLVSAPS SVGVSFSGDH  420
HHSTNGGEQY HLRSSQQVEN ENHLQGLMNS LANGNSSIFG GGGLDHNNFG GFSSGTTATR  480
VSAMDQQHNN PNYDEAKLHQ NLSVNFGGSD KLTLDFLGVG GMVRNMNGGH GYSQRDHQQQ  540
QHHGINMISS LDPELKSTQA SQLFGGTTLQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34118185369Zinc finger protein JACKDAW
5b3h_F1e-34118185369Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.41390.0fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028947264.10.0protein indeterminate-domain 6, chloroplastic-like
TrEMBLA0A498IA560.0A0A498IA56_MALDO; Uncharacterized protein
STRINGXP_009351634.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.21e-110C2H2-like zinc finger protein